Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_I20
         (310 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0029 - 27163121-27163818,27163992-27164067,27164184-271658...    26   5.2  

>05_07_0029 -
           27163121-27163818,27163992-27164067,27164184-27165896,
           27166285-27166364,27166516-27166684
          Length = 911

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 96  RVVTVSRLGSSRAECRYGSQY 34
           + +  S LG  R+EC YGS Y
Sbjct: 134 KTMDASELGGHRSECSYGSIY 154


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.309    0.126    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,465,299
Number of Sequences: 37544
Number of extensions: 36202
Number of successful extensions: 78
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)