Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_I18
         (295 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    28   0.33 
SPAC23C11.05 |||inorganic pyrophosphatase |Schizosaccharomyces p...    26   1.0  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    24   4.0  
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac...    24   5.3  
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    23   7.1  
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi...    23   7.1  
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    23   7.1  
SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster...    23   7.1  
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p...    23   9.3  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    23   9.3  
SPAC5H10.13c |gmh2||alpha-1,2-galactosyltransferase Gmh2 |Schizo...    23   9.3  
SPAC1783.06c |atg12|apg12|autophagy associated protein Atg12|Sch...    23   9.3  
SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        23   9.3  

>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 27.9 bits (59), Expect = 0.33
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = +3

Query: 99  RQVSTLHQRGAARKLGASVELIASDILDHYRTFALLERLLTVPSKLSEQMIFQIDEPT 272
           RQVS+       RK+  S++ +AS+  +     A + ++  +PS  SE  +     PT
Sbjct: 71  RQVSSTIGSSTGRKVSGSIQRLASNFKNPSNPHADVSKIDRLPSDSSESHVATPSSPT 128


>SPAC23C11.05 |||inorganic pyrophosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 289

 Score = 26.2 bits (55), Expect = 1.0
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -3

Query: 203 KGECSVVVQNIAGYQLNRGTKFSCCSTLMQCRHLPSLHEHPSIHSW-YISGS 51
           K + S+V  ++ G   N     S  ST+   + L      PS+H W YISGS
Sbjct: 239 KSDFSLVNVSVTGSVANDP---SVSSTIPPAQELAPAPVDPSVHKWFYISGS 287


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
           Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 35  VITRL*ILKYTSYGLRDAHVVKAGVYIASTWSSTKT 142
           V+T + ILK +S  +  + VV+A ++I S   S  T
Sbjct: 807 VVTLIGILKDSSLSMHHSSVVQAVMHICSQMGSKST 842


>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
           Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 585

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 19  VDVFVSNYT-LIDPEIYQLWIEGCSCSEGRCLHCINVEQHE 138
           +D +  N++ ++ P+      EG   SE +CL C N+   +
Sbjct: 214 LDEYYGNHSDVMHPKWVHSLFEGTLTSETKCLTCENITSRD 254


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 65  TSYGLRDAHVVKAGVYIASTWSSTKTWCL 151
           T YG RD   +K+  Y     ++  +WCL
Sbjct: 228 TKYGFRDEAFMKSTNYDLGKVNNGWSWCL 256


>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 606

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 58  EIYQLWIEGCSCSEGRCLHCINVE 129
           EI + W+E  S      + CINVE
Sbjct: 253 EIPRAWLEHASNRSSTLVFCINVE 276


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = +1

Query: 16  EVDVFVSNYTLIDPEIYQLWIEGCSCSEGRCL---HCINVEQ 132
           E  V + NYTL D  + ++  E   C E  CL   H +  EQ
Sbjct: 232 ETTVLMRNYTLPDGRVIKVGSERYECPE--CLFQPHLVGSEQ 271


>SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 480

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +1

Query: 109 LHCINVEQHENLVPLLS**PAIFWTTTEHSPFWRDSS 219
           LHC +     N++P  +  P++   T+ H P+  D +
Sbjct: 63  LHCPSTNGKTNVLPSYASTPSLSPMTSSHFPYASDGT 99


>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 446

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 60  FRIYKRVITNEYVYFCVPSC 1
           F + KR+ITNEY+   V  C
Sbjct: 361 FPVLKRMITNEYLNSDVRIC 380


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 8/46 (17%), Positives = 24/46 (52%)
 Frame = +1

Query: 22  DVFVSNYTLIDPEIYQLWIEGCSCSEGRCLHCINVEQHENLVPLLS 159
           D++ + +++ D     +W++     +   ++   V+Q   ++PL+S
Sbjct: 241 DLYFNLHSICDRNTVHMWLQWIFPRQFGLINAFQVKQLHKVIPLVS 286


>SPAC5H10.13c |gmh2||alpha-1,2-galactosyltransferase Gmh2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 346

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = -3

Query: 179 QNIAGYQLNRGTKFSCCSTLMQCRHLPSLHEHPSIHSW 66
           Q++ GY +++ ++ +    L+  R + + HE P    W
Sbjct: 279 QDMLGYLISKHSQLASLVGLIPQRKINAFHEGPENMEW 316


>SPAC1783.06c |atg12|apg12|autophagy associated protein
           Atg12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -1

Query: 274 LVGSSI*KIICSDNFDGTVRSLSKRANVL*WSKISLAINSTEAPS 140
           L+  ++  I  S  F+   R L K   +   S + L +NS+ APS
Sbjct: 59  LLRKTVFSINASQRFEKVTRFLKKELGLPMNSSLVLYVNSSFAPS 103


>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 173 YFGPLQNIRPFGETP 217
           +F P++ IRPF E P
Sbjct: 80  HFFPIKRIRPFHENP 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,247,056
Number of Sequences: 5004
Number of extensions: 24109
Number of successful extensions: 74
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 71828050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)