Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_I18
         (295 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1524 + 27442435-27442627,27442928-27443323,27443815-27444116     28   1.1  
09_02_0308 + 7137099-7137132,7137495-7137611,7138252-7138319,713...    27   2.0  
05_04_0370 + 20700734-20700803,20704224-20704257,20704326-207045...    27   3.5  
01_06_1562 - 38268514-38268902,38269310-38269451,38269517-382698...    27   3.5  
01_01_1094 + 8631951-8632053,8632266-8632563,8633276-8633304,863...    26   4.6  
06_02_0106 - 11898493-11901471                                         26   6.1  
09_04_0588 - 18789971-18790000,18790334-18790507,18791470-187919...    25   8.0  
04_01_0289 + 3830052-3831134,3831141-3831230,3831494-3831525,383...    25   8.0  

>07_03_1524 + 27442435-27442627,27442928-27443323,27443815-27444116
          Length = 296

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -3

Query: 191 SVVVQNIAGYQLNRGTKFSCCSTLMQCRHLPSLHEHPS 78
           ++V + +A  +L +   F   STL +C+H   L  HPS
Sbjct: 45  AIVREELARMRLTQHDSFGVGSTLHRCQHAGGLLVHPS 82


>09_02_0308 +
           7137099-7137132,7137495-7137611,7138252-7138319,
           7138413-7138538,7138650-7139619,7139641-7139737,
           7140026-7140113,7140336-7140396,7140425-7140447,
           7140663-7140776,7141193-7141306,7144731-7144825,
           7146506-7146824,7147166-7147309,7147463-7147564,
           7147868-7147971,7148121-7148247,7148804-7148845,
           7148939-7149091,7149326-7149426,7149807-7150227
          Length = 1139

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +1

Query: 193 HSPFWRDSSRFHQS 234
           H+P W++SSRFH S
Sbjct: 234 HTPSWQNSSRFHNS 247


>05_04_0370 +
           20700734-20700803,20704224-20704257,20704326-20704514,
           20705258-20705606,20705681-20705822,20706115-20706494
          Length = 387

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -3

Query: 173 IAGYQLNRGTKFSCCSTLMQCRHLPSLHEHPSIHSWYISGSISV 42
           +A   +++ T  +  +    C   P+LH  P  HS  ISG +S+
Sbjct: 320 LANLNISQCTALTPPAVQAVCDSFPALHTCPGRHSLIISGCLSL 363


>01_06_1562 -
           38268514-38268902,38269310-38269451,38269517-38269865,
           38270848-38271107
          Length = 379

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -3

Query: 173 IAGYQLNRGTKFSCCSTLMQCRHLPSLHEHPSIHSWYISGSISV 42
           +A   +++ T  +  +    C   P+LH  P  HS  ISG +S+
Sbjct: 312 LASLNISQCTALTPPAVQAVCDSFPALHTCPERHSLIISGCLSL 355


>01_01_1094 +
           8631951-8632053,8632266-8632563,8633276-8633304,
           8633406-8633518
          Length = 180

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/50 (24%), Positives = 24/50 (48%)
 Frame = -3

Query: 218 EESLQKGECSVVVQNIAGYQLNRGTKFSCCSTLMQCRHLPSLHEHPSIHS 69
           E+ L +   +  ++    Y+       SCC TL QC ++ + H + ++ S
Sbjct: 123 EKRLHQASSTTTIKICVDYKGGFVNCSSCCYTLQQCFNMVNGHGYATVRS 172


>06_02_0106 - 11898493-11901471
          Length = 992

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -3

Query: 128 STLMQCRHLPSLHEHPSIHSWYISGSISV 42
           S + +CRH   LH   SIH++ +   + +
Sbjct: 450 SVISKCRHTEDLHVGKSIHAYAVRSRLEL 478


>09_04_0588 -
           18789971-18790000,18790334-18790507,18791470-18791954,
           18792912-18793266
          Length = 347

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
 Frame = -3

Query: 197 ECSVVVQNIAGYQLN-RGTKFS---CCSTLMQCRHLPSLHEHP 81
           +C +  +++ G+        F+   CC+ + +   LP  HEHP
Sbjct: 125 KCDICGKSVKGFSFRCTSCSFAMHPCCAAMSRRMDLPVAHEHP 167


>04_01_0289 +
           3830052-3831134,3831141-3831230,3831494-3831525,
           3833690-3834623
          Length = 712

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +1

Query: 46  LIDPEIYQLWIEGCSCSEGRCLHCINVEQHENLVPLLS**PAIFWTTTEHSPFWR-DSSR 222
           L+ P I+++W+E    +  RC    + +Q  +   L++    + W   EH+  +R + ++
Sbjct: 294 LLLPVIFEVWVEMLLYAGNRCSRESHAKQLNSGGELIT----LVWLLAEHAGLYRINKTK 349

Query: 223 FHQSC 237
            H  C
Sbjct: 350 QHFKC 354


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,738,784
Number of Sequences: 37544
Number of extensions: 148851
Number of successful extensions: 373
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 328462236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)