Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_I17
         (400 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0104 - 830884-831282,831511-832205,832368-833387,833570-83...    28   2.4  
05_05_0030 - 21698625-21698752,21699589-21699627,21699708-216998...    27   7.2  
04_03_0622 + 18106448-18106508,18107431-18108281                       26   9.5  

>03_01_0104 -
           830884-831282,831511-832205,832368-833387,833570-833696,
           834342-834709,834780-835059,835137-835466
          Length = 1072

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +1

Query: 301 MRTNHPL*ARASGESRRVP*TNPMSVLF 384
           M   H L   A G+S+RVP  NPM   F
Sbjct: 140 MANKHVLLLHAGGDSKRVPWANPMGKAF 167


>05_05_0030 -
           21698625-21698752,21699589-21699627,21699708-21699822,
           21699927-21699992,21701064-21701203,21701424-21701473,
           21701608-21702045,21702757-21702839,21702941-21702977,
           21703366-21703457,21703531-21703615,21703950-21704029,
           21704049-21704105,21704350-21704747,21706322-21707223,
           21707331-21707421,21708123-21710273,21710375-21710813,
           21711180-21711299
          Length = 1836

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 187 QPVDLYSRYMRLQSNRRSIYLKKSMNIVICN*MIKL 294
           QP  LY+     +S R +  L++S   VIC+ + KL
Sbjct: 235 QPNGLYTEASNTESEREASQLQQSAEAVICDSLSKL 270


>04_03_0622 + 18106448-18106508,18107431-18108281
          Length = 303

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 150 CSEAHDSMCVCYTTC*LVFSLYASS 224
           CSE +DS   C T C ++ SL  +S
Sbjct: 73  CSEINDSGLACLTNCKMLMSLKLNS 97


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,144,464
Number of Sequences: 37544
Number of extensions: 157419
Number of successful extensions: 237
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)