Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_I17
         (400 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067216-9|AAC17520.2|  646|Caenorhabditis elegans Hypothetical ...    29   0.93 
Z48230-1|CAA88262.2|  587|Caenorhabditis elegans Hypothetical pr...    27   6.5  

>AF067216-9|AAC17520.2|  646|Caenorhabditis elegans Hypothetical
           protein C35E7.4 protein.
          Length = 646

 Score = 29.5 bits (63), Expect = 0.93
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
 Frame = +1

Query: 7   GNVNIR-FYYKSLRETSTTQLIFIYK--ETHTMNAFSDYMYRLHKCA*E--LIAQRRTTR 171
           G + IR F++KS R T    L+F+ K  ET+  N+  + +  LHK   +   +      R
Sbjct: 442 GELVIRVFHFKSSRFTLVRPLVFLKKECETYVQNSKKELVLVLHKAMKQDPSLLDTCIKR 501

Query: 172 CAFVTQPVDL 201
           C F  Q VD+
Sbjct: 502 CQFPHQFVDV 511


>Z48230-1|CAA88262.2|  587|Caenorhabditis elegans Hypothetical
           protein F42G10.1 protein.
          Length = 587

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 15/61 (24%), Positives = 29/61 (47%)
 Frame = +1

Query: 88  HTMNAFSDYMYRLHKCA*ELIAQRRTTRCAFVTQPVDLYSRYMRLQSNRRSIYLKKSMNI 267
           H +   + Y Y  HK    + ++ R  R   V+  +D Y  Y+   SN++ ++   + +I
Sbjct: 26  HPIPCNNFYEYICHKNITRVPSRLRDVRAMEVSDDIDQYQEYVFHASNKQRLWQSVNPDI 85

Query: 268 V 270
           V
Sbjct: 86  V 86


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,627,939
Number of Sequences: 27780
Number of extensions: 165282
Number of successful extensions: 270
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)