Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_I16
         (394 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.06c |rpl44|rpl28|60S ribosomal protein L28/L44|Schizosa...    57   8e-10
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom...    24   7.3  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    24   9.7  

>SPAC1687.06c |rpl44|rpl28|60S ribosomal protein
           L28/L44|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 134

 Score = 57.2 bits (132), Expect = 8e-10
 Identities = 38/98 (38%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
 Frame = +2

Query: 5   EANNVTNLNSYRYNGLIHKKAVGVVENPDRKGFTIVYKKAKATNKPVKNIIRRPFKAGAR 184
           E  NV+  N+ R++GL + KAVGV  N  R    I     K   KP K   +      + 
Sbjct: 33  EPVNVSGKNAQRFSGLCNDKAVGVQANSPRGVVLITKTNPKNAQKPAKLFRKDVIANASS 92

Query: 185 RSLFK--AKRLLKANHYRTDLTKATLRRASAILRSQRP 292
           R  +K  A R+ +   YR DL K ++ RASAIL SQRP
Sbjct: 93  RKTYKSIAGRIGRTG-YRDDLVKVSVARASAILSSQRP 129


>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 595

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 116 KKAKATNKPVKNIIRRPFKAGARRSLFKAKRLLKANH 226
           K  +A NK +  +   PFK   RR +FK+++  K  H
Sbjct: 552 KGMQAVNKDIGFV---PFKKNNRRKVFKSRKNPKHRH 585


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -1

Query: 220 CL*QSLGFEKRPPRSSFEWTTDNVLYRFIGCLGLLINYREALSVRILN 77
           CL        RPP ++      N   + IG L L+ +  + LS RIL+
Sbjct: 499 CLHAIYSLVNRPPFATLGHVFHNTPMKAIGLLNLICSNVQDLSNRILH 546


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,237,000
Number of Sequences: 5004
Number of extensions: 21271
Number of successful extensions: 56
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)