Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_I16
(394 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1254 - 35275050-35275178,35275701-35275867,35275969-35276116 55 2e-08
01_06_0431 + 29308635-29308782,29308882-29309048,29309747-29309869 55 2e-08
05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650 54 4e-08
09_02_0478 - 9749306-9749382,9749543-9749659,9749711-9750398,975... 29 1.8
06_03_1314 + 29266320-29266346,29266463-29266556,29266663-292667... 28 2.3
01_06_0147 + 26997641-26997688,26997783-26997857,26997966-269980... 27 5.4
10_07_0083 - 12746062-12746307 27 7.1
04_04_0824 - 28399144-28399385,28400193-28400312,28400422-284004... 27 7.1
02_05_0272 - 27348537-27348728,27349035-27349192,27349292-273493... 26 9.4
02_02_0474 + 10738476-10738797,10739568-10739677,10739891-107400... 26 9.4
>02_05_1254 - 35275050-35275178,35275701-35275867,35275969-35276116
Length = 147
Score = 54.8 bits (126), Expect = 2e-08
Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Frame = +2
Query: 5 EANNVTNLNSYRYNGLIHKKAVGVVENPDRKGFTIVYK-KAKATNKPVKNIIRRPFKAGA 181
E NN+ N++SY+++GL +KK V + + + ++ K K N P K + +
Sbjct: 36 EPNNLYNVHSYKHSGLANKKTVTIQPSGGKDAAVVLSTTKTKKQNAPAKLYHKSVMRKEF 95
Query: 182 RRSLFKAKRLLKANHYRTDLTKATLRRASAILRS 283
R+ K + N+YR DLTK L R S++ RS
Sbjct: 96 RKMAKAVKNQVSDNYYRPDLTKPALARLSSVYRS 129
>01_06_0431 + 29308635-29308782,29308882-29309048,29309747-29309869
Length = 145
Score = 54.8 bits (126), Expect = 2e-08
Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 5/98 (5%)
Frame = +2
Query: 5 EANNVTNLNSYRYNGLIHKKAVGVVENPDRKGFTIVYK-KAKATNKPV----KNIIRRPF 169
E NN+ N++SY+++GL +KK V V ++ ++ K + NKP K+++R+ F
Sbjct: 36 EPNNLYNVHSYKHSGLANKKTVTVQPASGKETAVVLSTTKTEKQNKPASLYHKSVMRKEF 95
Query: 170 KAGARRSLFKAKRLLKANHYRTDLTKATLRRASAILRS 283
+ A+ K + N+YR DLTK L R SA+ RS
Sbjct: 96 RKMAKA----VKNQVSDNYYRPDLTKPALARLSAVYRS 129
>05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650
Length = 147
Score = 54.0 bits (124), Expect = 4e-08
Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Frame = +2
Query: 5 EANNVTNLNSYRYNGLIHKKAVGVVENPDRKGFTIVYK-KAKATNKPVKNIIRRPFKAGA 181
E NN+ N++SY+++GL +KK V + + + ++ K K N P K + +
Sbjct: 36 EPNNLYNVHSYKHSGLANKKTVTIQPSGVKDAAVVLSTTKTKKQNAPAKLYHKSVMRKEF 95
Query: 182 RRSLFKAKRLLKANHYRTDLTKATLRRASAILRS 283
R+ K + N+YR DLTK L R S++ RS
Sbjct: 96 RKMAKAVKNQVSDNYYRPDLTKPALARLSSVYRS 129
>09_02_0478 -
9749306-9749382,9749543-9749659,9749711-9750398,
9750521-9751161,9751336-9751462
Length = 549
Score = 28.7 bits (61), Expect = 1.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 205 LGFEKRPPRSSFEWTTDNVLYRFIGC 128
L K PP+ S++WT N++Y + C
Sbjct: 243 LAESKIPPQFSYKWTARNLMYETLKC 268
>06_03_1314 +
29266320-29266346,29266463-29266556,29266663-29266712,
29266798-29266847,29266945-29267053,29267135-29267195,
29267291-29267343,29267629-29267721,29268091-29268166,
29268401-29268508,29268596-29268840
Length = 321
Score = 28.3 bits (60), Expect = 2.3
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = -1
Query: 163 TTDNVLYRFIGCLGLLINYREALSVRILNDTDGFLMDQAIVSIRVEVSHIV 11
T + V+ F GC L+ A V L+D D F+ Q I++ V+H++
Sbjct: 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAALTIVTHVL 157
>01_06_0147 +
26997641-26997688,26997783-26997857,26997966-26998052,
26998566-26998622,26998867-26998959,26999528-26999600,
26999830-26999905,27000217-27000280,27000951-27000980,
27001251-27001367,27002742-27002782,27002870-27003176,
27003279-27003368,27003479-27003541,27003678-27003752,
27003922-27003984,27004714-27004784,27004885-27005068
Length = 537
Score = 27.1 bits (57), Expect = 5.4
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 145 KEHYPSSIQSWSEEVS 192
K HYPS I SW E++S
Sbjct: 305 KHHYPSPIVSWIEDLS 320
>10_07_0083 - 12746062-12746307
Length = 81
Score = 26.6 bits (56), Expect = 7.1
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = -3
Query: 152 CSLQVYWLPWPSYKLS*SPFCQDSQRHRRLSYGSSHCIY 36
C+ V+W P + +S P C++ + R S H Y
Sbjct: 12 CAASVHWFYEPEHHMSGDPSCEELEMERSQILESIHRSY 50
>04_04_0824 -
28399144-28399385,28400193-28400312,28400422-28400453,
28400531-28400625,28400713-28400786,28400883-28401018,
28401096-28401333,28401508-28401555,28401593-28401780,
28401862-28401983,28402061-28402226,28402321-28402443,
28403068-28403139,28403244-28403351,28404212-28404328,
28404458-28404596,28404702-28404808,28404904-28405013,
28405141-28405274,28405348-28405497,28405571-28405791,
28405868-28406677,28410261-28410473
Length = 1254
Score = 26.6 bits (56), Expect = 7.1
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = -1
Query: 97 LSVRILNDTDGFLMDQAIVSIRVEVSH 17
+SVR L+D+D + +A+ ++VEV+H
Sbjct: 534 ISVRPLSDSDRVKIKKALRGVKVEVTH 560
>02_05_0272 -
27348537-27348728,27349035-27349192,27349292-27349323,
27349420-27349514,27349614-27349687,27349800-27349878,
27350015-27350078,27350156-27350218,27350300-27350442,
27350566-27350703,27350792-27350913,27350993-27351158,
27351276-27351398,27351609-27351680,27351773-27351880,
27352481-27352597,27352727-27352865,27352974-27353080,
27353167-27353276,27353892-27354025,27354106-27354255,
27354329-27354549,27354647-27355318
Length = 1092
Score = 26.2 bits (55), Expect = 9.4
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = -1
Query: 97 LSVRILNDTDGFLMDQAIVSIRVEVSH 17
+SVR L+D D + +A+ ++VEV+H
Sbjct: 417 ISVRPLSDADRVKIKKALRGVKVEVTH 443
>02_02_0474 +
10738476-10738797,10739568-10739677,10739891-10740094,
10740400-10740576,10740659-10740811,10741535-10741624,
10741939-10742049,10742169-10742285,10742881-10743032,
10743116-10743200,10743597-10743691,10744211-10744376,
10744459-10744654,10745662-10745795
Length = 703
Score = 26.2 bits (55), Expect = 9.4
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +2
Query: 74 VVENPDRKGFTIVYKKAKATNKPVKNIIRRPFKAGA 181
++EN R+GF + K NK V ++ P++ A
Sbjct: 475 LIENMRREGFEFMIGPPKVINKTVDGKLQEPYEIAA 510
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,824,754
Number of Sequences: 37544
Number of extensions: 132779
Number of successful extensions: 300
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 297
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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