Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_I16
         (394 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR457024-1|CAG33305.1|  137|Homo sapiens RPL28 protein.                94   1e-19
BC011582-1|AAH11582.1|  137|Homo sapiens ribosomal protein L28 p...    94   1e-19
BC010182-1|AAH10182.1|  137|Homo sapiens ribosomal protein L28 p...    94   1e-19
BC010173-1|AAH10173.1|  137|Homo sapiens ribosomal protein L28 p...    94   1e-19
U14969-1|AAA85657.1|  137|Homo sapiens ribosomal protein L28 pro...    93   3e-19
AB007179-1|BAA25838.1|   53|Homo sapiens ribosomal protein L28 p...    48   1e-05
AB209627-1|BAD92864.1|   95|Homo sapiens ribosomal protein L28 v...    47   2e-05

>CR457024-1|CAG33305.1|  137|Homo sapiens RPL28 protein.
          Length = 137

 Score = 94.3 bits (224), Expect = 1e-19
 Identities = 44/97 (45%), Positives = 59/97 (60%)
 Frame = +2

Query: 5   EANNVTNLNSYRYNGLIHKKAVGVVENPDRKGFTIVYKKAKATNKPVKNIIRRPFKAGAR 184
           E NN+   NS+RYNGLIH+K VGV    D KG  +V K+     KP  + +R      AR
Sbjct: 28  EPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVIKRRSGQRKPATSYVRTTINKNAR 87

Query: 185 RSLFKAKRLLKANHYRTDLTKATLRRASAILRSQRPI 295
            +L   + +++ N YR DL  A +RRASAILRSQ+P+
Sbjct: 88  ATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQKPV 124


>BC011582-1|AAH11582.1|  137|Homo sapiens ribosomal protein L28
           protein.
          Length = 137

 Score = 94.3 bits (224), Expect = 1e-19
 Identities = 44/97 (45%), Positives = 59/97 (60%)
 Frame = +2

Query: 5   EANNVTNLNSYRYNGLIHKKAVGVVENPDRKGFTIVYKKAKATNKPVKNIIRRPFKAGAR 184
           E NN+   NS+RYNGLIH+K VGV    D KG  +V K+     KP  + +R      AR
Sbjct: 28  EPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVIKRRSGQRKPATSYVRTTINKNAR 87

Query: 185 RSLFKAKRLLKANHYRTDLTKATLRRASAILRSQRPI 295
            +L   + +++ N YR DL  A +RRASAILRSQ+P+
Sbjct: 88  ATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQKPV 124


>BC010182-1|AAH10182.1|  137|Homo sapiens ribosomal protein L28
           protein.
          Length = 137

 Score = 94.3 bits (224), Expect = 1e-19
 Identities = 44/97 (45%), Positives = 59/97 (60%)
 Frame = +2

Query: 5   EANNVTNLNSYRYNGLIHKKAVGVVENPDRKGFTIVYKKAKATNKPVKNIIRRPFKAGAR 184
           E NN+   NS+RYNGLIH+K VGV    D KG  +V K+     KP  + +R      AR
Sbjct: 28  EPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVIKRRSGQRKPATSYVRTTINRNAR 87

Query: 185 RSLFKAKRLLKANHYRTDLTKATLRRASAILRSQRPI 295
            +L   + +++ N YR DL  A +RRASAILRSQ+P+
Sbjct: 88  ATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQKPV 124


>BC010173-1|AAH10173.1|  137|Homo sapiens ribosomal protein L28
           protein.
          Length = 137

 Score = 94.3 bits (224), Expect = 1e-19
 Identities = 44/97 (45%), Positives = 59/97 (60%)
 Frame = +2

Query: 5   EANNVTNLNSYRYNGLIHKKAVGVVENPDRKGFTIVYKKAKATNKPVKNIIRRPFKAGAR 184
           E NN+   NS+RYNGLIH+K VGV    D KG  +V K+     KP  + +R      AR
Sbjct: 28  EPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVIKRRSGQRKPATSYVRTTINKNAR 87

Query: 185 RSLFKAKRLLKANHYRTDLTKATLRRASAILRSQRPI 295
            +L   + +++ N YR DL  A +RRASAILRSQ+P+
Sbjct: 88  ATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQKPV 124


>U14969-1|AAA85657.1|  137|Homo sapiens ribosomal protein L28
           protein.
          Length = 137

 Score = 93.1 bits (221), Expect = 3e-19
 Identities = 43/97 (44%), Positives = 59/97 (60%)
 Frame = +2

Query: 5   EANNVTNLNSYRYNGLIHKKAVGVVENPDRKGFTIVYKKAKATNKPVKNIIRRPFKAGAR 184
           E NN+   NS+RYNGLIH+K VGV    D KG  +V K+     KP  + +R      AR
Sbjct: 28  EPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVIKRRSGQRKPATSYVRTTINKNAR 87

Query: 185 RSLFKAKRLLKANHYRTDLTKATLRRASAILRSQRPI 295
            +L   + +++ N YR DL  A +RRASAILR+Q+P+
Sbjct: 88  ATLSSIRHMIRKNKYRPDLRMAAIRRASAILRTQKPV 124


>AB007179-1|BAA25838.1|   53|Homo sapiens ribosomal protein L28
           protein.
          Length = 53

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 21/47 (44%), Positives = 30/47 (63%)
 Frame = +2

Query: 155 IRRPFKAGARRSLFKAKRLLKANHYRTDLTKATLRRASAILRSQRPI 295
           +R      AR +L   + +++ N YR DL  A +RRASAILRSQ+P+
Sbjct: 4   VRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQKPV 50


>AB209627-1|BAD92864.1|   95|Homo sapiens ribosomal protein L28
           variant protein.
          Length = 95

 Score = 47.2 bits (107), Expect = 2e-05
 Identities = 21/39 (53%), Positives = 26/39 (66%)
 Frame = +2

Query: 5   EANNVTNLNSYRYNGLIHKKAVGVVENPDRKGFTIVYKK 121
           E NN+   NS+RYNGLIH+K VGV    D KG  +V K+
Sbjct: 36  EPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVIKR 74


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,534,467
Number of Sequences: 237096
Number of extensions: 759137
Number of successful extensions: 1321
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1321
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2756025120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)