Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_I16
         (394 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75547-8|CAA99898.1|  126|Caenorhabditis elegans Hypothetical pr...    34   0.032
Z37139-9|CAA85493.1|  396|Caenorhabditis elegans Hypothetical pr...    32   0.17 
AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical ...    27   3.6  
Z70212-4|CAA94164.1|  322|Caenorhabditis elegans Hypothetical pr...    27   6.3  
X56213-1|CAA39670.1| 1651|Caenorhabditis elegans vitellogenin pr...    26   8.4  
AF047659-3|AAC04423.2| 1650|Caenorhabditis elegans Vitellogenin ...    26   8.4  
AF047659-2|AAQ91901.1| 1651|Caenorhabditis elegans Vitellogenin ...    26   8.4  

>Z75547-8|CAA99898.1|  126|Caenorhabditis elegans Hypothetical
           protein R11D1.8 protein.
          Length = 126

 Score = 34.3 bits (75), Expect = 0.032
 Identities = 29/94 (30%), Positives = 45/94 (47%)
 Frame = +2

Query: 5   EANNVTNLNSYRYNGLIHKKAVGVVENPDRKGFTIVYKKAKATNKPVKNIIRRPFKAGAR 184
           E  N+  +NS +Y+GL +K A+ V  +   KG  +  K  K   +P K +        ++
Sbjct: 30  EKFNLKKVNSPKYSGLANKHAIDV--SAAAKGVVVSTKNEKG--RPAKAVTTSTL---SK 82

Query: 185 RSLFKAKRLLKANHYRTDLTKATLRRASAILRSQ 286
             +   +RL K N       K   RRA+AI+RSQ
Sbjct: 83  TPVASVRRLAK-NAGFNKFNKLAQRRAAAIVRSQ 115


>Z37139-9|CAA85493.1|  396|Caenorhabditis elegans Hypothetical
           protein C14B1.5 protein.
          Length = 396

 Score = 31.9 bits (69), Expect = 0.17
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = -1

Query: 157 DNVLYRFIGCLGLLINYREALSVRILNDTDGFLMDQAIVSIRVEVSHIVGLV 2
           D+   + +GC  LL++Y  +  V I N TDG  M    V+I + +SH++  V
Sbjct: 92  DDYTAKSMGC-DLLVHYGHSCLVPIQN-TDGIAMLYVFVNIHINLSHLIDCV 141


>AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical
           protein Y47D3B.7 protein.
          Length = 1113

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = +2

Query: 95  KGFTIVYKKAKATNKPVKNIIRRPFKAGARRSLFKAKRLLKANHYRTDLTKATLRRA 265
           +G TI+ ++ K   +   N+I + ++      + + K LL  +  +     ATLRRA
Sbjct: 343 QGTTIIVRRPKTERRTAHNLIEKKYRCSINDRIQQLKVLLCGDEAKLS-KSATLRRA 398


>Z70212-4|CAA94164.1|  322|Caenorhabditis elegans Hypothetical
           protein R04D3.6 protein.
          Length = 322

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 171 LNGRRIMFFTGLLVALAFL*TIVKPFLSGFSTTP 70
           L G  I+F    LV +  L T+V P +S +  TP
Sbjct: 265 LTGEEILFLEFFLVLIPALPTLVDPIISIYFVTP 298


>X56213-1|CAA39670.1| 1651|Caenorhabditis elegans vitellogenin
           protein.
          Length = 1651

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 130 NQ*TCKEHYPSSIQSWSEEVSFQSQEIAKGKSL 228
           N+  C++ + S +QS    + F SQEI + +S+
Sbjct: 651 NESPCEQTFSSRVQSLLNNIPFSSQEIDRFESV 683


>AF047659-3|AAC04423.2| 1650|Caenorhabditis elegans Vitellogenin
           structural genes (yolk protein genes) protein 6, isoform
           a protein.
          Length = 1650

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 130 NQ*TCKEHYPSSIQSWSEEVSFQSQEIAKGKSL 228
           N+  C++ + S +QS    + F SQEI + +S+
Sbjct: 651 NESPCEQTFSSRVQSLLNNIPFSSQEIDRFESV 683


>AF047659-2|AAQ91901.1| 1651|Caenorhabditis elegans Vitellogenin
           structural genes (yolk protein genes) protein 6, isoform
           c protein.
          Length = 1651

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 130 NQ*TCKEHYPSSIQSWSEEVSFQSQEIAKGKSL 228
           N+  C++ + S +QS    + F SQEI + +S+
Sbjct: 651 NESPCEQTFSSRVQSLLNNIPFSSQEIDRFESV 683


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,701,220
Number of Sequences: 27780
Number of extensions: 114316
Number of successful extensions: 278
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 278
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)