Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_I15
         (321 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    28   0.40 
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    24   6.6  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    23   8.7  
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    23   8.7  

>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 27.9 bits (59), Expect = 0.40
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = -2

Query: 299  IYRVMRRTHRHKLFYYQHL*NHIFKIPAICSKTP-FLVY*IP*RGPFNLFIHQIYLYYNR 123
            +YRV     R  +F++++L   +F +  IC  +P F++  +P      LF   +Y Y   
Sbjct: 1009 VYRVDEVISRVFMFFFRNLFQIVFVLAVICYSSPMFMILIVP------LFF--LYRYNQV 1060

Query: 122  YYVQ 111
            YY Q
Sbjct: 1061 YYTQ 1064


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -3

Query: 301 VYTE*CDALTDTNSSIINIYKITSLKYQLFVLKHPF 194
           V+T    +   TNSSI   Y   S  YQ     +P+
Sbjct: 366 VFTNTTSSSNSTNSSIPTTYPSNSTTYQNITTSYPW 401


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
            Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 149  HQIYLYYNRYYVQLNYVIDVT 87
            H +++  NRYY+Q  +V DVT
Sbjct: 1439 HPLFVGINRYYLQRQHV-DVT 1458


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 140 YLYYNRYYVQLNYV 99
           +LYYN +Y+ LN +
Sbjct: 448 FLYYNGFYIPLNSI 461


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,198,758
Number of Sequences: 5004
Number of extensions: 20910
Number of successful extensions: 47
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)