Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_I15
         (321 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1361 - 25998873-25999223,25999311-25999461,25999546-259997...    28   1.9  
01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419           26   5.7  

>07_03_1361 -
           25998873-25999223,25999311-25999461,25999546-25999783,
           25999898-26000108,26000210-26000340,26000909-26001037,
           26001329-26002130
          Length = 670

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -3

Query: 124 GTMYSLIMLLM*RDASTARRDGTRLLLIEPTYIVMYNV 11
           G +Y ++       A+ ARR GT  +  +PTY V+Y++
Sbjct: 159 GAIYEVLNATADYTAAAARRFGTGEISFDPTYPVIYSM 196


>01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419
          Length = 200

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 9/29 (31%), Positives = 20/29 (68%)
 Frame = +3

Query: 213 NSWYFKDVIL*MLIIEEFVSVSASHHSVY 299
           N W F+DV +  + + ++++VS++ H+ Y
Sbjct: 16  NCWSFEDVQVNDISLADYLAVSSTKHATY 44


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,973,388
Number of Sequences: 37544
Number of extensions: 108824
Number of successful extensions: 154
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 411066120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)