Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_I15
         (321 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   1.2  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   4.8  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   4.8  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   4.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   4.8  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    20   6.4  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     20   6.4  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    20   8.4  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.6 bits (46), Expect = 1.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 293 RVMRRTHRHKLFYYQH 246
           R++ +  R +LFYY H
Sbjct: 223 RIVNKDRRGELFYYMH 238


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic
          acetylcholine receptor alpha6subunit protein.
          Length = 529

 Score = 20.6 bits (41), Expect = 4.8
 Identities = 5/16 (31%), Positives = 11/16 (68%)
 Frame = +2

Query: 2  HEAYVVHHNICRFNEK 49
          H  Y+++ ++C  +EK
Sbjct: 41 HHTYIIYESLCGRHEK 56


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic
          acetylcholine receptor alpha6subunit protein.
          Length = 529

 Score = 20.6 bits (41), Expect = 4.8
 Identities = 5/16 (31%), Positives = 11/16 (68%)
 Frame = +2

Query: 2  HEAYVVHHNICRFNEK 49
          H  Y+++ ++C  +EK
Sbjct: 41 HHTYIIYESLCGRHEK 56


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 4.8
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +3

Query: 21  ITIYVGSMRSRRVPSRRAVLASRHINNIIKLYIVP 125
           +T Y+ S    +V    ++L S H+  ++ + I+P
Sbjct: 264 LTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIP 298


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 4.8
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +3

Query: 21  ITIYVGSMRSRRVPSRRAVLASRHINNIIKLYIVP 125
           +T Y+ S    +V    ++L S H+  ++ + I+P
Sbjct: 264 LTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIP 298


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 20.2 bits (40), Expect = 6.4
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 155 FIHQIYLYYNRYYVQLNYVIDV 90
           F +QIY     +Y+ L  +I V
Sbjct: 200 FFYQIYATLGSFYIPLFVMIQV 221


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 20.2 bits (40), Expect = 6.4
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -3

Query: 151 FIKSIYTTIGTMYSLIMLLM*RDAS 77
           F+++ ++  GT++ LI + +  DAS
Sbjct: 162 FLRTRWSISGTVFDLINIHLFHDAS 186


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 9/33 (27%), Positives = 15/33 (45%)
 Frame = +3

Query: 123 PIVV*IDLMNKQVEWTSSRNSIY*KGCFRTNSW 221
           P  V +D+M + +   S  +  Y   C+   SW
Sbjct: 29  PATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,616
Number of Sequences: 438
Number of extensions: 1535
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6968808
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)