Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_I08
         (318 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0365 + 9488328-9488583,9489343-9489495,9491159-9491451,949...    29   0.60 
02_01_0327 - 2241228-2242509,2243227-2243247,2243299-2243614,224...    29   0.60 
11_06_0110 + 20212221-20214011,20214072-20214368                       27   3.2  
12_02_0405 - 18635503-18635871,18636703-18636817,18636970-186377...    27   4.2  

>02_02_0365 +
           9488328-9488583,9489343-9489495,9491159-9491451,
           9491538-9492105,9492503-9493011
          Length = 592

 Score = 29.5 bits (63), Expect = 0.60
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +1

Query: 181 DNGVSQLISWDNGLAFDATDSKYLTENCDYLHNVECGERTQIEP 312
           +NG    I  + G A    DSK LT+    L    C +R ++EP
Sbjct: 13  NNGKRDYIGTETGQALHKQDSKVLTKKTIKLDAPPCSKRPKLEP 56


>02_01_0327 -
           2241228-2242509,2243227-2243247,2243299-2243614,
           2244232-2244496,2245887-2245985
          Length = 660

 Score = 29.5 bits (63), Expect = 0.60
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
 Frame = -2

Query: 200 NWETPLSHKQXY--SHEMW*G*KPKSSGHLNDSWATTTPRAAASTIKHR 60
           +W  P   +  +   H +W G  P   GHL  S  T TP +   T ++R
Sbjct: 472 DWALPFRGRAEHVPEHSLWFGFSPHHDGHLCASDLTATPPSLRHTWRYR 520


>11_06_0110 + 20212221-20214011,20214072-20214368
          Length = 695

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +1

Query: 199 LISWDNGLAFDATDSKYLTENCDYLHNVECGERT 300
           L SW  G  +D  D + L E+C     V C   T
Sbjct: 53  LSSWQRGGHYDDDDDQLLEEDCCQWRGVRCSNLT 86


>12_02_0405 -
           18635503-18635871,18636703-18636817,18636970-18637721,
           18638540-18638542
          Length = 412

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 244 WSQWRQKRDHCPRKSIGRHRYHTNXFIL 161
           WSQWR  +   P + IGR  +    F+L
Sbjct: 299 WSQWRTIQGLQPNQKIGRPYFAYGKFVL 326


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,620,706
Number of Sequences: 37544
Number of extensions: 141724
Number of successful extensions: 242
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 398975940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)