Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_I08
         (318 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68220-2|CAA92485.1|  234|Caenorhabditis elegans Hypothetical pr...    28   1.7  
U97408-3|AAB93343.1|  339|Caenorhabditis elegans Hypothetical pr...    27   2.9  
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr...    27   3.9  
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p...    27   3.9  
Z92972-5|CAB07484.1|  212|Caenorhabditis elegans Hypothetical pr...    26   6.8  
AC087081-3|AAK66040.1|  240|Caenorhabditis elegans Hypothetical ...    26   6.8  
AC017117-12|AAF16614.2|   98|Caenorhabditis elegans Hypothetical...    26   6.8  

>Z68220-2|CAA92485.1|  234|Caenorhabditis elegans Hypothetical
           protein T20D3.2 protein.
          Length = 234

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 17/39 (43%), Positives = 18/39 (46%)
 Frame = +1

Query: 187 GVSQLISWDNGLAFDATDSKYLTENCDYLHNVECGERTQ 303
           G+   ISW NG     T  KYL  N   L  V C  RTQ
Sbjct: 64  GMDDSISWRNGSYIFNTVQKYLEMNVTELIKV-CNTRTQ 101


>U97408-3|AAB93343.1|  339|Caenorhabditis elegans Hypothetical
           protein F48A9.1 protein.
          Length = 339

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = -2

Query: 248 YLESVASKARPLSQEINWETPLSHKQXYSHEMW*G--*KPKSSGHLNDSWATTT 93
           Y E    + +   QE++W+TP+S +   +H+   G     K +  LND+  TTT
Sbjct: 8   YYEHSLIEEKTKHQELSWQTPIS-RSLVTHDPSTGGIQLSKKNAMLNDAVTTTT 60


>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical protein
            ZK945.9 protein.
          Length = 3178

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +1

Query: 202  ISWDNGLAFD-ATDSKYLTENCDYLHNV 282
            I+ DN L+ D A + KY T+N D L+NV
Sbjct: 1731 IALDNPLSSDLAANLKYATDNYDSLYNV 1758


>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
            protein ZK945.9 protein.
          Length = 3178

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +1

Query: 202  ISWDNGLAFD-ATDSKYLTENCDYLHNV 282
            I+ DN L+ D A + KY T+N D L+NV
Sbjct: 1731 IALDNPLSSDLAANLKYATDNYDSLYNV 1758


>Z92972-5|CAB07484.1|  212|Caenorhabditis elegans Hypothetical
           protein T19C9.5 protein.
          Length = 212

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 196 QLISWDNGLAFDATDSKYLTENCD 267
           QL+SW+  L  +A + KY  E  D
Sbjct: 62  QLLSWNESLVAEAENEKYYCEPAD 85


>AC087081-3|AAK66040.1|  240|Caenorhabditis elegans Hypothetical
           protein Y82E9BL.16 protein.
          Length = 240

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +1

Query: 190 VSQLISWDNGLAFDATDSKYLTENCDYLHNVE 285
           ++ L  W N   F+   +++  E+ +YL N+E
Sbjct: 123 IANLDQWKNAKTFEFWSARFNCEHLEYLFNLE 154


>AC017117-12|AAF16614.2|   98|Caenorhabditis elegans Hypothetical
           protein F43C11.12 protein.
          Length = 98

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 175 LCDNGVSQLISWDNGLAFDATDSKY 249
           +CD+GV +L  + NG+ F+     Y
Sbjct: 56  ICDDGVWKLTKYPNGITFNKDPPSY 80


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,827,763
Number of Sequences: 27780
Number of extensions: 112441
Number of successful extensions: 283
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 366105812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)