Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_I07
         (216 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0710 + 27038709-27038865,27039205-27039346,27039383-270395...    25   8.3  
03_03_0197 - 15345314-15345995,15346205-15346334,15346453-15346594     25   8.3  

>03_05_0710 +
           27038709-27038865,27039205-27039346,27039383-27039558,
           27039639-27039703,27040000-27040371,27040429-27040504,
           27040505-27040571,27040672-27040825,27041122-27041289,
           27041392-27041502,27041612-27041722,27041864-27041881,
           27041917-27042018,27042587-27042817,27043390-27043464,
           27043744-27043815,27044597-27044782,27044868-27045026,
           27045251-27045343,27045730-27045801,27046336-27046426,
           27046669-27046847,27047252-27047333,27047526-27047636,
           27047715-27047821,27048194-27048271,27048357-27048452,
           27048627-27048722,27048839-27048856
          Length = 1154

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -2

Query: 113 RALPTLNALSTAPVVIPQSWIQTPL*PIALLHNPSS 6
           R  P + A++ +PVVIP   +  P  P+A +H+P S
Sbjct: 204 REPPPVPAIAPSPVVIPAPIVDPP--PVA-VHSPVS 236


>03_03_0197 - 15345314-15345995,15346205-15346334,15346453-15346594
          Length = 317

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +1

Query: 28  AIGHSGVCIQDWGITTGAVERAFRVGKALGKETNDVNELLAFLRTLPA 171
           A+GH+      WG   GAV+  ++   A   +   +  LL   +T PA
Sbjct: 159 AVGHAAAAGGAWGAANGAVD--YQQADAAAAQLQCLQHLLLQPQTTPA 204


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,523,208
Number of Sequences: 37544
Number of extensions: 58862
Number of successful extensions: 163
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 14,793,348
effective HSP length: 51
effective length of database: 12,878,604
effective search space used: 257572080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)