Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_I07
         (216 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106589-1|AAC78228.2|  629|Caenorhabditis elegans Abnormal acet...    29   0.34 
AF025378-1|AAC14016.2|  629|Caenorhabditis elegans acetylcholine...    29   0.34 
Z72506-10|CAA96623.1|  364|Caenorhabditis elegans Hypothetical p...    25   9.7  
Z71263-8|CAA95826.1|  364|Caenorhabditis elegans Hypothetical pr...    25   9.7  

>AF106589-1|AAC78228.2|  629|Caenorhabditis elegans Abnormal
           acetylcholinesterase protein2 protein.
          Length = 629

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +1

Query: 31  IGHSGVCIQDWGITTGA--VERAFRVGKALGKETNDVNELLAFLRTLPAMRISKHDTDN 201
           I  SG  I  W   T    ++ +FR+ K +   + D+N ++  LR++PA  + + + DN
Sbjct: 254 IAKSGSIINSWASATPPTMLDLSFRLAKKVNCSSPDMNAIVKCLRSVPA-HLVQAEADN 311


>AF025378-1|AAC14016.2|  629|Caenorhabditis elegans
           acetylcholinesterase protein.
          Length = 629

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +1

Query: 31  IGHSGVCIQDWGITTGA--VERAFRVGKALGKETNDVNELLAFLRTLPAMRISKHDTDN 201
           I  SG  I  W   T    ++ +FR+ K +   + D+N ++  LR++PA  + + + DN
Sbjct: 254 IAKSGSIINSWASATPPTMLDLSFRLAKKVNCSSPDMNAIVKCLRSVPA-HLVQAEADN 311


>Z72506-10|CAA96623.1|  364|Caenorhabditis elegans Hypothetical
           protein F52A8.6a protein.
          Length = 364

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -2

Query: 158 LRNASNSFTSLVSLPRALPTLNALSTAPVVIPQ 60
           +R +S  F SL   PRAL  ++A ST  + +PQ
Sbjct: 59  IRPSSRKF-SLGVTPRALSRIDATSTPSLDVPQ 90


>Z71263-8|CAA95826.1|  364|Caenorhabditis elegans Hypothetical
           protein F52A8.6a protein.
          Length = 364

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -2

Query: 158 LRNASNSFTSLVSLPRALPTLNALSTAPVVIPQ 60
           +R +S  F SL   PRAL  ++A ST  + +PQ
Sbjct: 59  IRPSSRKF-SLGVTPRALSRIDATSTPSLDVPQ 90


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,821,427
Number of Sequences: 27780
Number of extensions: 49114
Number of successful extensions: 106
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 12,740,198
effective HSP length: 51
effective length of database: 11,323,418
effective search space used: 226468360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)