Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_I07
         (216 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   0.23 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   2.2  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    20   3.8  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    19   6.7  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    19   8.8  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.8 bits (49), Expect = 0.23
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -3

Query: 136 LHHWFPCPE 110
           LHHW  CPE
Sbjct: 470 LHHWHHCPE 478


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 2.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 161 VLRNASNSFTSLVSLPRAL 105
           VLR  + S+ SL SLP  L
Sbjct: 262 VLRTFNASYNSLDSLPEGL 280


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 19.8 bits (39), Expect = 3.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 109 ALGKETNDVNELLAFLRTLPAMRIS 183
           ALG  TND++ L A    L  +R S
Sbjct: 455 ALGLPTNDISLLFAVDWMLDRIRTS 479


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 19.0 bits (37), Expect = 6.7
 Identities = 4/6 (66%), Positives = 6/6 (100%)
 Frame = -3

Query: 199 CQCHVC 182
           C+CH+C
Sbjct: 43  CKCHLC 48


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 18.6 bits (36), Expect = 8.8
 Identities = 5/6 (83%), Positives = 6/6 (100%)
 Frame = -3

Query: 142 IHLHHW 125
           I+LHHW
Sbjct: 205 INLHHW 210


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,759
Number of Sequences: 438
Number of extensions: 601
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3154875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)