Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_I06
(260 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar... 29 0.13
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 26 0.95
SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p... 25 1.3
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 25 1.7
SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual 25 2.2
SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces p... 25 2.2
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S... 24 2.9
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 24 2.9
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual 23 5.1
SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41 |Schizosacch... 23 5.1
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak... 23 5.1
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 23 5.1
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 23 6.7
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo... 23 6.7
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 23 8.8
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni... 23 8.8
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa... 23 8.8
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 23 8.8
SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual 23 8.8
SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|ch... 23 8.8
>SPAC25B8.04c |||mitochondrial splicing suppressor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 28.7 bits (61), Expect = 0.13
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 149 RLFQLHLLNYQLCAPSRPPLSPKTFSL 229
RLFQLH + ++ PS+ P P SL
Sbjct: 222 RLFQLHFIGPEVVVPSKQPNLPSPLSL 248
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 25.8 bits (54), Expect = 0.95
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +1
Query: 109 ALVRPLAAVPT-HTQIVPVAPAQLSAVRTFQTTSVTKDIFSAAKFIGAGA 255
ALV LA++ H+ I+P+ A R QT T +I F+G GA
Sbjct: 2235 ALVALLASLSRYHSWILPILGLGFGAPRWLQTLWGTSNIGIYVPFLGKGA 2284
>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 25.4 bits (53), Expect = 1.3
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 48 NAVCRKIDRPCSQDCYLQQHSSCATTRSS 134
+A + +PCSQ +L++ SC T S+
Sbjct: 377 SAYVASLPQPCSQKRHLEEDYSCLTEHSA 405
>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1588
Score = 25.0 bits (52), Expect = 1.7
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = -3
Query: 141 CRHCCEWSHKSCVAEDS 91
C +C EW H CV S
Sbjct: 1472 CHNCLEWFHYECVGLSS 1488
>SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 381
Score = 24.6 bits (51), Expect = 2.2
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +2
Query: 101 ATQLLCDHSQQCLHTHRLFQLHLL--NYQLCAPSRPPLS 211
A+ +L S+Q HTHR F+ ++ N QL P S
Sbjct: 118 ASSILSSLSRQFFHTHRAFKADVMDSNGQLVLQLNRPFS 156
>SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 344
Score = 24.6 bits (51), Expect = 2.2
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +3
Query: 54 VCRKIDRPCSQDCYLQQHSSC 116
VC K DRP + HSSC
Sbjct: 83 VCTKCDRPFLSEYIEDHHSSC 103
>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 517
Score = 24.2 bits (50), Expect = 2.9
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2
Query: 170 LNYQLCAPSRPPLS 211
+NY CAPS P LS
Sbjct: 416 INYSKCAPSSPTLS 429
>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 462
Score = 24.2 bits (50), Expect = 2.9
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +2
Query: 11 SLLSVVAPLKTQKCCMPQD*SPLQPGLLSSATQLLCDHS 127
S+LS PLK SPL+ SS T ++ DHS
Sbjct: 216 SILSKSPPLKVPNKNRSSTFSPLRTPTSSSKTFVIVDHS 254
Score = 23.4 bits (48), Expect = 5.1
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +1
Query: 151 IVPVAPAQLSAVR-TFQTTSVTKDIFSAA 234
I P AP + TFQ ++ D+FS+A
Sbjct: 15 IFPAAPFSTKKEKSTFQNNLISSDVFSSA 43
>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 23.4 bits (48), Expect = 5.1
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -3
Query: 258 RCASTNEFGSRENVFGDRGG 199
RCA GS E VFGD+ G
Sbjct: 108 RCADLCFAGSNEIVFGDKFG 127
>SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 23.4 bits (48), Expect = 5.1
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = +3
Query: 210 HQRHFLCCQIHWCWRS 257
HQ H LC H C R+
Sbjct: 87 HQLHLLCLTYHLCTRN 102
>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 708
Score = 23.4 bits (48), Expect = 5.1
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +2
Query: 74 PLQPGLLSSATQLLCDHSQQCLHTHRLFQLHLLN 175
PL L++ +T ++ D + C H F+ +L+N
Sbjct: 418 PLVESLIAHSTNIMVDLVRICSHNPCRFRRNLIN 451
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 23.4 bits (48), Expect = 5.1
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Frame = -3
Query: 156 NNLC-VCRHCCEWSHKSCVAEDSSPGCRGDQSC 61
+ LC VC C H+ C E S G QSC
Sbjct: 1273 HGLCIVCGLCLHVMHEDCYKEWFSNGDSISQSC 1305
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 23.0 bits (47), Expect = 6.7
Identities = 7/20 (35%), Positives = 12/20 (60%)
Frame = +2
Query: 2 H*GSLLSVVAPLKTQKCCMP 61
H + +++ AP Q CC+P
Sbjct: 152 HLNNKMNISAPTAIQSCCLP 171
>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 739
Score = 23.0 bits (47), Expect = 6.7
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +2
Query: 74 PLQPGLLSSATQLLCDHSQQCLHTHRL 154
P+ P L S +L+ + + LHTH++
Sbjct: 398 PMNPILNGSVVRLIHPFTNRNLHTHKI 424
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 22.6 bits (46), Expect = 8.8
Identities = 8/22 (36%), Positives = 10/22 (45%)
Frame = +3
Query: 84 QDCYLQQHSSCATTRSSAYTHT 149
+D Y QH C S Y+ T
Sbjct: 147 EDAYTGQHGECVLVIDSGYSFT 168
>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
Orc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 707
Score = 22.6 bits (46), Expect = 8.8
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 139 THTQIVPVAPAQLSAVRTFQTTSVTKDIFSAAK 237
THTQ+ + A+L AVR S F+A K
Sbjct: 516 THTQLEIIIAARLEAVRDDDVFSSDAIRFAARK 548
>SPCC553.09c |spb70|pol12|DNA polymerase alpha
B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 574
Score = 22.6 bits (46), Expect = 8.8
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3
Query: 186 AHLPDHLCHQRHF 224
A L H+ HQRHF
Sbjct: 460 ARLVSHVLHQRHF 472
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 22.6 bits (46), Expect = 8.8
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = +2
Query: 170 LNYQLCAPSRPPLSP 214
L+ ++ +P +PPLSP
Sbjct: 168 LSIEIMSPQKPPLSP 182
>SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual
Length = 456
Score = 22.6 bits (46), Expect = 8.8
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +2
Query: 197 RPPLSPKTFSLLPNSLV 247
R L+PK S++PN+LV
Sbjct: 159 RAVLNPKRVSVIPNALV 175
>SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 22.6 bits (46), Expect = 8.8
Identities = 7/20 (35%), Positives = 10/20 (50%)
Frame = -2
Query: 202 WSGRCAQLIIEQVQLEQSVC 143
W G CA + Q+ S+C
Sbjct: 153 WGGLCAMKPVSQIPESDSIC 172
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,089,826
Number of Sequences: 5004
Number of extensions: 18902
Number of successful extensions: 58
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 51430850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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