Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_I06
(260 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0295 + 22099791-22100030,22100681-22100797,22100886-22102616 29 0.68
03_05_1122 + 30546314-30549277,30549615-30549693,30549857-305499... 27 1.6
03_05_0351 - 23382786-23382821,23383373-23383634,23384369-233856... 27 1.6
03_06_0322 + 33114988-33115130,33116972-33117024,33117432-331177... 26 3.6
12_01_0910 + 8858443-8859414 26 4.8
04_04_1098 + 30876785-30876835,30876846-30877171,30877396-308774... 25 6.3
03_06_0251 + 32654223-32654423,32655275-32655589 25 6.3
10_02_0003 + 4022220-4022900 25 8.4
08_02_0785 + 21190002-21190253,21190452-21190523,21191498-211916... 25 8.4
03_02_0327 + 7481822-7481930,7482604-7482726,7482970-7483061,748... 25 8.4
01_01_0242 + 1997427-1997429,1997893-1998580,2000199-2000234,200... 25 8.4
>09_06_0295 + 22099791-22100030,22100681-22100797,22100886-22102616
Length = 695
Score = 28.7 bits (61), Expect = 0.68
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +3
Query: 84 QDCYLQQHSSCATTRSSAYTHTDXXXXXXXXXXXAHLPDHL 206
++C+ ++ S A + S + HTD A++PDHL
Sbjct: 365 KECFTEEDSENARQKQS-FNHTDMVFSGLGNSNRAYMPDHL 404
>03_05_1122 + 30546314-30549277,30549615-30549693,30549857-30549945,
30550422-30550538,30550873-30551111,30552279-30552365,
30552732-30552831,30553319-30553532,30553617-30553777
Length = 1349
Score = 27.5 bits (58), Expect = 1.6
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -3
Query: 156 NNLCVCRHCCEWSHKSCVAEDSSPGCRGDQSCGIQHFC 43
++LC C C E H C E ++ Q+C + FC
Sbjct: 1003 SSLCTCSQCEEKYHPGCSPETTNTSNVSSQACDL--FC 1038
>03_05_0351 -
23382786-23382821,23383373-23383634,23384369-23385675,
23385776-23386290,23386379-23386741,23386916-23387284,
23387365-23388057,23388152-23388238,23388354-23388612
Length = 1296
Score = 27.5 bits (58), Expect = 1.6
Identities = 9/35 (25%), Positives = 20/35 (57%)
Frame = +3
Query: 21 QSSHPSKHKNAVCRKIDRPCSQDCYLQQHSSCATT 125
+S+H ++H + D+PC+Q L+ C+++
Sbjct: 229 RSAHLARHNELYATRRDKPCAQSIALECPEDCSSS 263
>03_06_0322 +
33114988-33115130,33116972-33117024,33117432-33117780,
33118450-33118518,33119015-33119150,33120048-33120080
Length = 260
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Frame = -3
Query: 162 NWNNLCV-CRHCCEWSHKSCV 103
N +NL + C C +W H SCV
Sbjct: 191 NPDNLMIQCEDCSDWFHPSCV 211
>12_01_0910 + 8858443-8859414
Length = 323
Score = 25.8 bits (54), Expect = 4.8
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +2
Query: 77 LQPGLLSSATQLLCDHSQQ--CLHTHRLFQLHLLNYQLCAPSRPPLSP 214
L G ++ +L+ HS+ L + L L LL L AP PP+SP
Sbjct: 34 LLAGAAAATRRLIAAHSRHFLALSSLLLLPLSLLLLSLPAPFLPPVSP 81
>04_04_1098 +
30876785-30876835,30876846-30877171,30877396-30877418,
30877687-30879392
Length = 701
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +3
Query: 36 SKHKNAVCRKIDRPCSQDCYLQQHSSCATTRSSAY 140
S HKNA C+K R S+ H + +SS +
Sbjct: 298 SDHKNAKCKKSSRHDSESDSESDHKNARREKSSRH 332
>03_06_0251 + 32654223-32654423,32655275-32655589
Length = 171
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +3
Query: 51 AVCRKIDRPCSQDCYLQQH 107
A C+ + R CS+DC L H
Sbjct: 23 AACKFLRRRCSRDCVLAPH 41
>10_02_0003 + 4022220-4022900
Length = 226
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 188 APSRPPLSPKTFSLLPNSLVLAQ 256
APS PPL+P +PN+ +A+
Sbjct: 26 APSLPPLAPTASGQVPNTADMAK 48
>08_02_0785 +
21190002-21190253,21190452-21190523,21191498-21191631,
21191700-21191850,21191938-21192087
Length = 252
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = -3
Query: 162 NWNNLCVCRHCCEWSHKSCVAEDSSPGCRGDQSCGIQH 49
N + C C +++H++CV +GD +C I H
Sbjct: 72 NLESPCACTGSLKYAHRACVQRWCDE--KGDLTCEICH 107
>03_02_0327 +
7481822-7481930,7482604-7482726,7482970-7483061,
7483144-7483285,7483625-7483929,7484120-7484173,
7484253-7484380,7484536-7484680,7484929-7484934
Length = 367
Score = 25.0 bits (52), Expect = 8.4
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = +2
Query: 74 PLQPGLLSSATQLLCDHSQQCLHTHRLFQLHLLNYQLCAPSRPPLSPKTFSLLP 235
P GLLS+A + D L + + + APS L+P+ S+LP
Sbjct: 250 PGNSGLLSAAKEARYDKEAVIKFFRMLIRRRFFSNEPAAPSPWSLTPREDSILP 303
>01_01_0242 +
1997427-1997429,1997893-1998580,2000199-2000234,
2000786-2001114,2001178-2001855
Length = 577
Score = 25.0 bits (52), Expect = 8.4
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = +2
Query: 89 LLSSATQLLCDHSQQCLHTHRLFQLHLLN-YQLCAPSRPPLSPKTFSL 229
+L+S LLC H+ L + + L P RPP P TF L
Sbjct: 3 VLASFLLLLCHHAHADCEPATCGNLTINPPFWLDEPGRPPCGPPTFQL 50
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,687,962
Number of Sequences: 37544
Number of extensions: 146038
Number of successful extensions: 508
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 14,793,348
effective HSP length: 65
effective length of database: 12,352,988
effective search space used: 259412748
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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