Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_I06
(260 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D86741-2|BAA21841.1| 92|Caenorhabditis elegans ATP synthase su... 34 0.012
D86740-2|BAA13165.1| 92|Caenorhabditis elegans ATP synthase su... 34 0.012
AC090999-18|AAK26152.1| 116|Caenorhabditis elegans Hypothetical... 34 0.012
U88311-7|AAB42348.1| 1173|Caenorhabditis elegans Lethal protein ... 30 0.26
U85515-1|AAB42081.1| 1173|Caenorhabditis elegans LET-502 protein. 30 0.26
Z68105-2|CAA92118.1| 270|Caenorhabditis elegans Hypothetical pr... 28 1.1
Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical pr... 27 1.4
Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical pr... 27 1.4
AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein. 27 1.4
U41996-5|AAA83474.1| 296|Caenorhabditis elegans Hypothetical pr... 27 1.8
U13071-2|AAL65793.1| 988|Caenorhabditis elegans Hypothetical pr... 27 1.8
Z66498-2|CAA91291.2| 419|Caenorhabditis elegans Hypothetical pr... 27 2.4
AL110484-3|CAB54394.1| 243|Caenorhabditis elegans Hypothetical ... 27 2.4
AF106581-7|ABC48241.1| 362|Caenorhabditis elegans Nuclear hormo... 27 2.4
U88179-1|AAB52661.3| 216|Caenorhabditis elegans Hypothetical pr... 26 3.2
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ... 26 4.2
AL023851-1|CAA19554.1| 149|Caenorhabditis elegans Hypothetical ... 26 4.2
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein. 26 4.2
Z96048-6|CAE17841.1| 327|Caenorhabditis elegans Hypothetical pr... 25 5.6
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr... 25 5.6
Z83220-4|CAC42264.1| 617|Caenorhabditis elegans Hypothetical pr... 25 5.6
Z81132-15|CAE17969.1| 327|Caenorhabditis elegans Hypothetical p... 25 5.6
AL117204-13|CAB55128.1| 286|Caenorhabditis elegans Hypothetical... 25 5.6
AF067214-6|AAC17005.2| 457|Caenorhabditis elegans Hypothetical ... 25 5.6
Z81465-2|CAB03861.1| 1642|Caenorhabditis elegans Hypothetical pr... 25 7.4
AF078787-7|AAC26954.2| 518|Caenorhabditis elegans Vegf (vascula... 25 7.4
Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical pr... 25 9.8
AL021472-7|CAA16303.2| 283|Caenorhabditis elegans Hypothetical ... 25 9.8
AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical ... 25 9.8
>D86741-2|BAA21841.1| 92|Caenorhabditis elegans ATP synthase
subunit protein.
Length = 92
Score = 34.3 bits (75), Expect = 0.012
Identities = 17/26 (65%), Positives = 18/26 (69%)
Frame = +1
Query: 181 AVRTFQTTSVTKDIFSAAKFIGAGAA 258
A R TT KDI SAAK+IGAGAA
Sbjct: 6 AARMISTTVARKDIDSAAKYIGAGAA 31
>D86740-2|BAA13165.1| 92|Caenorhabditis elegans ATP synthase
subunit protein.
Length = 92
Score = 34.3 bits (75), Expect = 0.012
Identities = 17/26 (65%), Positives = 18/26 (69%)
Frame = +1
Query: 181 AVRTFQTTSVTKDIFSAAKFIGAGAA 258
A R TT KDI SAAK+IGAGAA
Sbjct: 6 AARMISTTVARKDIDSAAKYIGAGAA 31
>AC090999-18|AAK26152.1| 116|Caenorhabditis elegans Hypothetical
protein Y82E9BR.3 protein.
Length = 116
Score = 34.3 bits (75), Expect = 0.012
Identities = 17/26 (65%), Positives = 18/26 (69%)
Frame = +1
Query: 181 AVRTFQTTSVTKDIFSAAKFIGAGAA 258
A R TT KDI SAAK+IGAGAA
Sbjct: 30 AARMISTTVARKDIDSAAKYIGAGAA 55
>U88311-7|AAB42348.1| 1173|Caenorhabditis elegans Lethal protein 502
protein.
Length = 1173
Score = 29.9 bits (64), Expect = 0.26
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -3
Query: 141 CRHCCEWSHKSCVAEDSSPGCRGDQSCGIQHFCVLRGATTDN 16
C++C +HK VA+ S P CR + G+ VL TDN
Sbjct: 1092 CKNCHFKTHKDHVAQGSLPMCR--YNTGLSRELVLMAPQTDN 1131
>U85515-1|AAB42081.1| 1173|Caenorhabditis elegans LET-502 protein.
Length = 1173
Score = 29.9 bits (64), Expect = 0.26
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -3
Query: 141 CRHCCEWSHKSCVAEDSSPGCRGDQSCGIQHFCVLRGATTDN 16
C++C +HK VA+ S P CR + G+ VL TDN
Sbjct: 1092 CKNCHFKTHKDHVAQGSLPMCR--YNTGLSRELVLMAPQTDN 1131
>Z68105-2|CAA92118.1| 270|Caenorhabditis elegans Hypothetical
protein F13E6.3 protein.
Length = 270
Score = 27.9 bits (59), Expect = 1.1
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -3
Query: 147 CVCRHCCEWSHKSCV 103
C C+ C +WSH +CV
Sbjct: 236 CKCKGCDQWSHLTCV 250
>Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical
protein T14G8.1 protein.
Length = 1787
Score = 27.5 bits (58), Expect = 1.4
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = -3
Query: 210 DRGGLEGAHS**LSRCNWNN-LCVCRHCCEWSHKSCVAEDSSPGCRGDQSC 61
++G +E H CN + L +C C H +C+ E+ GD SC
Sbjct: 256 EQGVVEENHQENCEVCNQDGELMLCDTCTRAYHVACIDENMEQPPEGDWSC 306
>Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical
protein T14G8.1 protein.
Length = 1787
Score = 27.5 bits (58), Expect = 1.4
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = -3
Query: 210 DRGGLEGAHS**LSRCNWNN-LCVCRHCCEWSHKSCVAEDSSPGCRGDQSC 61
++G +E H CN + L +C C H +C+ E+ GD SC
Sbjct: 256 EQGVVEENHQENCEVCNQDGELMLCDTCTRAYHVACIDENMEQPPEGDWSC 306
>AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.
Length = 1787
Score = 27.5 bits (58), Expect = 1.4
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = -3
Query: 210 DRGGLEGAHS**LSRCNWNN-LCVCRHCCEWSHKSCVAEDSSPGCRGDQSC 61
++G +E H CN + L +C C H +C+ E+ GD SC
Sbjct: 256 EQGVVEENHQENCEVCNQDGELMLCDTCTRAYHVACIDENMEQPPEGDWSC 306
>U41996-5|AAA83474.1| 296|Caenorhabditis elegans Hypothetical
protein F38E1.6 protein.
Length = 296
Score = 27.1 bits (57), Expect = 1.8
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 86 GLLSSATQLLCDHSQQCLHTHRLFQLHLLNY 178
G+L S +++ DH QC H++ + L L N+
Sbjct: 85 GILKSVEEII-DHELQCAHSYSYYILVLANF 114
>U13071-2|AAL65793.1| 988|Caenorhabditis elegans Hypothetical
protein T22F7.3 protein.
Length = 988
Score = 27.1 bits (57), Expect = 1.8
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -3
Query: 168 RCNWNNLCVCRHCCEWSHKSC 106
RC N C H C+ SHK C
Sbjct: 419 RCETNADCPSSHSCQGSHKVC 439
>Z66498-2|CAA91291.2| 419|Caenorhabditis elegans Hypothetical
protein M195.2 protein.
Length = 419
Score = 26.6 bits (56), Expect = 2.4
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +3
Query: 12 LCCQSSHPSKHKNAVCRKIDRPCSQDCYLQQHSSCATT 125
+ C+ S + N VC P + C Q SSCA +
Sbjct: 1 MACKCSTSTNISNRVCSCSPLPSTSSCGCQASSSCANS 38
>AL110484-3|CAB54394.1| 243|Caenorhabditis elegans Hypothetical
protein Y38E10A.3 protein.
Length = 243
Score = 26.6 bits (56), Expect = 2.4
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 113 LCDHSQQCLHTHRLFQLHLLNYQLCAPSR 199
L D ++C T + +L+ +N QL PSR
Sbjct: 98 LADEKEKCRFTREVTKLYQMNIQLDQPSR 126
>AF106581-7|ABC48241.1| 362|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 135 protein.
Length = 362
Score = 26.6 bits (56), Expect = 2.4
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -3
Query: 144 VCRHCCEWSHKSCVAEDSSPGCRGDQSCGIQH 49
+CR C + + ++ S+ CR D+SC I +
Sbjct: 24 ICRACSAFFRRYVLSPKSAIKCRKDKSCRIHY 55
>U88179-1|AAB52661.3| 216|Caenorhabditis elegans Hypothetical
protein R57.2 protein.
Length = 216
Score = 26.2 bits (55), Expect = 3.2
Identities = 10/44 (22%), Positives = 17/44 (38%)
Frame = -3
Query: 141 CRHCCEWSHKSCVAEDSSPGCRGDQSCGIQHFCVLRGATTDNKE 10
C H C + V + R D C I+H + + N++
Sbjct: 113 CHHMCVYETDQSVTRNMLTNMRKDSQCRIKHLSSILYCASQNRD 156
>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
protein.
Length = 1829
Score = 25.8 bits (54), Expect = 4.2
Identities = 14/48 (29%), Positives = 19/48 (39%)
Frame = -3
Query: 150 LCVCRHCCEWSHKSCVAEDSSPGCRGDQSCGIQHFCVLRGATTDNKEP 7
L +C C H C+ E+ GD SC C+ G +EP
Sbjct: 268 LLLCDTCPRAYHTVCIDENMEEPPEGDWSCA---HCIEHGPEVVKEEP 312
>AL023851-1|CAA19554.1| 149|Caenorhabditis elegans Hypothetical
protein Y68A4B.1 protein.
Length = 149
Score = 25.8 bits (54), Expect = 4.2
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -3
Query: 111 SCVAEDSSPGCRGDQSCGIQHF 46
+C+A D+ G DQ CG H+
Sbjct: 118 NCLAVDARVGLLADQPCGTAHY 139
>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
Length = 1829
Score = 25.8 bits (54), Expect = 4.2
Identities = 14/48 (29%), Positives = 19/48 (39%)
Frame = -3
Query: 150 LCVCRHCCEWSHKSCVAEDSSPGCRGDQSCGIQHFCVLRGATTDNKEP 7
L +C C H C+ E+ GD SC C+ G +EP
Sbjct: 268 LLLCDTCPRAYHTVCIDENMEEPPEGDWSCA---HCIEHGPEVVKEEP 312
>Z96048-6|CAE17841.1| 327|Caenorhabditis elegans Hypothetical
protein F57A10.6 protein.
Length = 327
Score = 25.4 bits (53), Expect = 5.6
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +2
Query: 71 SPLQPGLLSSATQLLCDHSQQCLHTHRLFQLHLLNYQLCAPSR 199
+P PG+ S +L + Q ++T L Q LL YQ P+R
Sbjct: 246 NPGLPGISESGRGILSTY--QKIYTSALLQYCLLTYQQTGPTR 286
>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical
protein W01F3.3 protein.
Length = 2175
Score = 25.4 bits (53), Expect = 5.6
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Frame = +3
Query: 18 CQSSHPSKHKNAV---CRKIDRPCSQDCYLQQHSS 113
C+ P K K V C K D P C + QHSS
Sbjct: 483 CEIGEPLKTKIGVPVNCAKTDCPSGYRCSVVQHSS 517
>Z83220-4|CAC42264.1| 617|Caenorhabditis elegans Hypothetical
protein C34B7.4 protein.
Length = 617
Score = 25.4 bits (53), Expect = 5.6
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = +2
Query: 41 TQKCCMPQD*SPLQPGLLSSATQLLCDHSQQCLHTHRLFQLHLLNYQLCAPSRPP 205
T K C S + L SSA C CLHT L + ++++ +C PP
Sbjct: 341 TGKACKAIYSSAYEEPLHSSAHLYACKF---CLHTTNLKEDLIVHWDICNAKHPP 392
>Z81132-15|CAE17969.1| 327|Caenorhabditis elegans Hypothetical
protein F57A10.6 protein.
Length = 327
Score = 25.4 bits (53), Expect = 5.6
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +2
Query: 71 SPLQPGLLSSATQLLCDHSQQCLHTHRLFQLHLLNYQLCAPSR 199
+P PG+ S +L + Q ++T L Q LL YQ P+R
Sbjct: 246 NPGLPGISESGRGILSTY--QKIYTSALLQYCLLTYQQTGPTR 286
>AL117204-13|CAB55128.1| 286|Caenorhabditis elegans Hypothetical
protein Y116A8C.22 protein.
Length = 286
Score = 25.4 bits (53), Expect = 5.6
Identities = 7/17 (41%), Positives = 9/17 (52%)
Frame = -3
Query: 156 NNLCVCRHCCEWSHKSC 106
N C+C C +W H C
Sbjct: 251 NGTCLCTKCQKWVHLKC 267
>AF067214-6|AAC17005.2| 457|Caenorhabditis elegans Hypothetical
protein F56C3.2 protein.
Length = 457
Score = 25.4 bits (53), Expect = 5.6
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +2
Query: 53 CMPQD*SPLQPGLLSSATQLLCDHSQQCLHTHRLFQLHLLNYQ 181
C+P D ++ +L A + L D + R F HL+N+Q
Sbjct: 3 CLPTDKLSIRACILYEALEHLNDEKYVYSNICRTFGYHLINFQ 45
>Z81465-2|CAB03861.1| 1642|Caenorhabditis elegans Hypothetical
protein C09F9.2 protein.
Length = 1642
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -3
Query: 141 CRHCCEWSHKSCVAEDSSPGCRGDQSCG 58
C H C+W+H +++P C SCG
Sbjct: 336 CEHSCDWTH----FPETTPNC--PNSCG 357
>AF078787-7|AAC26954.2| 518|Caenorhabditis elegans Vegf (vascular
endothelial growthfactor) receptor family protein 2
protein.
Length = 518
Score = 25.0 bits (52), Expect = 7.4
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = -3
Query: 171 SRCNWNNLCVCRHCCEWS-HKSCVAED 94
+ CNWNN C C ++ + C A++
Sbjct: 457 AECNWNNRYKCTICADYDLCRQCEAKN 483
>Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical protein
W05B2.2 protein.
Length = 1278
Score = 24.6 bits (51), Expect = 9.8
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Frame = -3
Query: 144 VCRHCCEWSHKSCVAE--DSSPGCRGDQSCGIQHFCV 40
+CR E + SC+ + GC D+ CG C+
Sbjct: 1209 ICRSEAESNMGSCLPKLFAGETGCEADEQCGAPATCM 1245
>AL021472-7|CAA16303.2| 283|Caenorhabditis elegans Hypothetical
protein Y17D7B.6 protein.
Length = 283
Score = 24.6 bits (51), Expect = 9.8
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Frame = -3
Query: 99 EDSSPGCRGDQSCGIQHF----CVLRGATTDNK 13
ED GC G +SC I +F CV D K
Sbjct: 46 EDCKNGCFGSESCIIAYFSLTTCVFYNYVNDGK 78
>AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical
protein ZC123.1 protein.
Length = 730
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Frame = -3
Query: 156 NNLCVC-RHCCEWSHKSCVAEDSSPGCRGDQSC 61
N C C R CC + + +C + C +Q C
Sbjct: 175 NGDCGCGRPCCYYQNPTCCNQGQKACCPPEQPC 207
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,377,773
Number of Sequences: 27780
Number of extensions: 123788
Number of successful extensions: 427
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 12,740,198
effective HSP length: 65
effective length of database: 10,934,498
effective search space used: 229624458
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -