Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_I05
         (105 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81058-11|CAH60760.1|  201|Caenorhabditis elegans Hypothetical p...    31   0.14 
AC006661-2|AAK31542.1|  253|Caenorhabditis elegans Spliceosome-a...    28   0.77 
CU457743-2|CAM36365.1|  695|Caenorhabditis elegans Hypothetical ...    25   7.1  
Z47809-2|CAA87780.1|  298|Caenorhabditis elegans Hypothetical pr...    25   9.4  
S50380-1|AAB24366.1|  161|Caenorhabditis elegans succinate-ubiqu...    25   9.4  
AB008569-1|BAA23717.1|  297|Caenorhabditis elegans iron-sulfur s...    25   9.4  

>Z81058-11|CAH60760.1|  201|Caenorhabditis elegans Hypothetical
           protein F11E6.11 protein.
          Length = 201

 Score = 30.7 bits (66), Expect = 0.14
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 75  FLIFLTRSYLIGYYECIKCCSTL 7
           FLI L   ++I YY CI CC+ L
Sbjct: 170 FLILLLSIFVIIYYSCIACCTIL 192


>AC006661-2|AAK31542.1|  253|Caenorhabditis elegans
           Spliceosome-associated proteinprotein 1 protein.
          Length = 253

 Score = 28.3 bits (60), Expect = 0.77
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = +3

Query: 18  NTLYIHNNRLNMI 56
           NTLY+HNNR+N I
Sbjct: 67  NTLYLHNNRINYI 79


>CU457743-2|CAM36365.1|  695|Caenorhabditis elegans Hypothetical
           protein K09E10.2 protein.
          Length = 695

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 90  FYYFFFLIFLTRSYLIGYYE 31
           FY+   LIFL  SY  G+Y+
Sbjct: 150 FYFIVPLIFLIGSYFSGFYK 169


>Z47809-2|CAA87780.1|  298|Caenorhabditis elegans Hypothetical
           protein F42A8.2 protein.
          Length = 298

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 12/21 (57%), Positives = 12/21 (57%), Gaps = 2/21 (9%)
 Frame = -1

Query: 57  RSYLIGYYECI--KCCSTLVP 1
           R  L G YECI   CCST  P
Sbjct: 191 RDRLDGLYECILCACCSTSCP 211


>S50380-1|AAB24366.1|  161|Caenorhabditis elegans
           succinate-ubiquinone oxidoreductasecomplex II
           iron-sulfur subunit protein.
          Length = 161

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 12/21 (57%), Positives = 12/21 (57%), Gaps = 2/21 (9%)
 Frame = -1

Query: 57  RSYLIGYYECI--KCCSTLVP 1
           R  L G YECI   CCST  P
Sbjct: 85  RDRLDGLYECILCACCSTSCP 105


>AB008569-1|BAA23717.1|  297|Caenorhabditis elegans iron-sulfur
           subunit of mitochondrialsuccinate dehydrogenase protein.
          Length = 297

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 12/21 (57%), Positives = 12/21 (57%), Gaps = 2/21 (9%)
 Frame = -1

Query: 57  RSYLIGYYECI--KCCSTLVP 1
           R  L G YECI   CCST  P
Sbjct: 190 RDRLDGLYECILCACCSTSCP 210


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,672,497
Number of Sequences: 27780
Number of extensions: 16141
Number of successful extensions: 74
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 12,740,198
effective HSP length: 16
effective length of database: 12,295,718
effective search space used: 221322924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)