Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_I04
         (129 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    23   4.2  
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ...    23   4.2  
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    23   7.3  

>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 22  FFSLLHHLLTMHKRGKVLHG 81
           FF++L H+ ++H+    LHG
Sbjct: 514 FFAVLDHVFSIHQTHLELHG 533


>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
          subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 668

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 80 PCNTFPRLCIVNKWC 36
          P  T PR CI  +WC
Sbjct: 28 PLVTVPRQCICLRWC 42


>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1052

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +1

Query: 7   SYFDV--FFSLLHHLLTMHKRGKVLHGDAGKIMYNV 108
           S FD+  F  LLHHLL++++  K     + +++ +V
Sbjct: 323 SDFDIESFCFLLHHLLSLYQTQKKELASSNELLASV 358


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 543,281
Number of Sequences: 5004
Number of extensions: 6824
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 2,362,478
effective HSP length: 23
effective length of database: 2,247,386
effective search space used: 42700334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)