Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_I04
         (129 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1624 + 38725452-38725537,38725823-38725844,38726194-38728038     26   3.7  
06_03_0898 + 25772496-25773501,25774540-25775150                       25   8.5  
04_01_0451 + 5845249-5846133,5846220-5846509,5855590-5856060,585...    25   8.5  
03_05_0395 - 23763531-23764493,23764539-23764708,23764750-237651...    25   8.5  

>01_06_1624 + 38725452-38725537,38725823-38725844,38726194-38728038
          Length = 650

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 83  SPCNTFPRLCIVNKWCNNEKKT 18
           SP NT+P      K+ NN+K+T
Sbjct: 87  SPANTYPNTPYTYKFVNNDKET 108


>06_03_0898 + 25772496-25773501,25774540-25775150
          Length = 538

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 22  FFSLLHHLLTMHKRGKVLH 78
           F   LHHL  M  RG V+H
Sbjct: 60  FVGSLHHLAVMRPRGVVVH 78


>04_01_0451 +
           5845249-5846133,5846220-5846509,5855590-5856060,
           5856898-5857063,5857100-5857498,5858031-5858075
          Length = 751

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -2

Query: 104 LYMILPASPCNTFPRLCIVNKWCNNEK 24
           ++++L     +T PR C+V++W    K
Sbjct: 626 IFVVLKFLGFDTIPRCCVVDRWTMGAK 652


>03_05_0395 -
           23763531-23764493,23764539-23764708,23764750-23765112,
           23765298-23765508,23766214-23766381
          Length = 624

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = -2

Query: 104 LYMILPASPCNTFPRLCIVNKWCNNEKKT 18
           ++++L     +T P  C+V++W    K T
Sbjct: 519 IFVVLKFLGFDTIPHFCVVDRWTMGAKAT 547


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,361,793
Number of Sequences: 37544
Number of extensions: 39639
Number of successful extensions: 99
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 14,793,348
effective HSP length: 23
effective length of database: 13,929,836
effective search space used: 264666884
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)