Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_I04
         (129 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical pr...    25   5.6  
U40934-4|AAA81682.1|  873|Caenorhabditis elegans Vacuolar h atpa...    25   5.6  
AB055110-1|BAB62291.1|  873|Caenorhabditis elegans VHA-5 protein.      25   5.6  
Z81476-1|CAB03921.2|  431|Caenorhabditis elegans Hypothetical pr...    25   7.4  
Z70287-8|CAA94301.2| 1717|Caenorhabditis elegans Hypothetical pr...    25   9.8  
AF142441-1|AAF66614.1|  701|Caenorhabditis elegans H+/oligopepti...    25   9.8  
AF003146-1|AAB54202.1|  701|Caenorhabditis elegans Oligopeptide ...    25   9.8  

>Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical protein
            F54F3.1 protein.
          Length = 1584

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 89   PASPCNTFPRLCIVNKWC 36
            PA+ CN  PR+C  N  C
Sbjct: 1153 PATNCNLEPRICHANAQC 1170


>U40934-4|AAA81682.1|  873|Caenorhabditis elegans Vacuolar h atpase
           protein 5 protein.
          Length = 873

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 19  VFFSLLHHLLTMHKRGKVLHGDA 87
           +F   +HH++   K+ K LHG+A
Sbjct: 687 LFGKPIHHVMQQKKKAKELHGNA 709


>AB055110-1|BAB62291.1|  873|Caenorhabditis elegans VHA-5 protein.
          Length = 873

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 19  VFFSLLHHLLTMHKRGKVLHGDA 87
           +F   +HH++   K+ K LHG+A
Sbjct: 687 LFGKPIHHVMQQKKKAKELHGNA 709


>Z81476-1|CAB03921.2|  431|Caenorhabditis elegans Hypothetical
          protein C25F9.1 protein.
          Length = 431

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 7  SYFDVFFSLLHHLLTMHKR 63
          SYF VF ++LH L+  +K+
Sbjct: 27 SYFGVFLNILHFLMLSNKK 45


>Z70287-8|CAA94301.2| 1717|Caenorhabditis elegans Hypothetical protein
            R09E10.7 protein.
          Length = 1717

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 108  YIIHDFTCITMQYFPAFMHSQQM 40
            YI+H F   + +YFP  M +Q +
Sbjct: 1557 YILHQFATDSARYFPHRMFNQNL 1579


>AF142441-1|AAF66614.1|  701|Caenorhabditis elegans H+/oligopeptide
           symporter OPT-3 protein.
          Length = 701

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 129 YSPPQNTYIIHDFTCI 82
           +SP + T+I H FTCI
Sbjct: 48  FSPSKATFIYHLFTCI 63


>AF003146-1|AAB54202.1|  701|Caenorhabditis elegans Oligopeptide
           transporter protein 3 protein.
          Length = 701

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 129 YSPPQNTYIIHDFTCI 82
           +SP + T+I H FTCI
Sbjct: 48  FSPSKATFIYHLFTCI 63


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,024,939
Number of Sequences: 27780
Number of extensions: 39764
Number of successful extensions: 114
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 12,740,198
effective HSP length: 23
effective length of database: 12,101,258
effective search space used: 229923902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)