Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_I03
         (208 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    24   2.4  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    24   3.2  
SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...    23   4.2  
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ...    22   9.6  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    22   9.6  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    22   9.6  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    22   9.6  

>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 200 FSGSTEKWVISRHHYRSRNDPPCNNL 123
           +S ST  +  SR + RSR+  P NN+
Sbjct: 644 YSRSTRSYSKSRSYSRSRSVTPINNI 669


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1125

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = +2

Query: 47   NKIPSKITDLPDNKFKYYVKQVLISKGYYRVDHYVNDS 160
            N +  +++D+ +++ K+      +SK YY V   +ND+
Sbjct: 1038 NDLHKRLSDVINSQQKFLSLSPQVSKDYYDVRSKLNDT 1075


>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 86  YCQVNR*FYLGSYCKPNTITY 24
           Y  + R  Y GSY  P T+T+
Sbjct: 94  YLHIGRGLYYGSYKYPRTMTW 114


>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -3

Query: 191 STEKWVISRHHYR 153
           S E ++++RHHYR
Sbjct: 225 SEETFLLNRHHYR 237


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1418

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 71   DLPDNKFKYYVKQVLISKGYYRVDHYVNDSDV 166
            D P  K+  Y  ++LIS+   + D   ++SD+
Sbjct: 1050 DEPSIKYNEYSVELLISEAEKQEDTSTDESDI 1081


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 173 ISRHHYRSRNDPPCN 129
           I+ HH RS   P CN
Sbjct: 527 ITYHHRRSAKHPSCN 541


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 38  SVYNKIPSKITDLPDNKFKYY 100
           SVY + P   TD+P+  F+ Y
Sbjct: 370 SVYFQQPLSRTDVPNQSFQQY 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 712,936
Number of Sequences: 5004
Number of extensions: 9777
Number of successful extensions: 30
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 48
effective length of database: 2,122,286
effective search space used: 42445720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)