Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_I03
         (208 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0937 + 33175966-33178020                                         26   4.8  
12_02_0117 - 13860418-13860524,13860612-13860810,13860969-138611...    25   6.3  
03_01_0411 + 3168593-3168829,3169217-3170209                           25   6.3  
02_05_0849 + 32202610-32202880,32204234-32205711,32205993-322061...    25   6.3  
12_01_0720 + 6347765-6347839,6347936-6348004,6348221-6348256,634...    25   8.4  
06_01_0768 + 5742938-5743196,5743291-5744729                           25   8.4  

>01_06_0937 + 33175966-33178020
          Length = 684

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -3

Query: 47  CKPNTITYKAFIT 9
           CKPNTITY   +T
Sbjct: 453 CKPNTITYTTLLT 465


>12_02_0117 -
           13860418-13860524,13860612-13860810,13860969-13861148,
           13861230-13861375,13862185-13862323,13863076-13863153,
           13863654-13863722,13863806-13863925,13864792-13864875,
           13864961-13865032,13865204-13865345,13866016-13866023
          Length = 447

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 80  DNKFKYYVKQVLISKGYYRVDHYVNDSDVW 169
           + +F Y VKQ LI     R D  ++D   W
Sbjct: 228 ETQFTYVVKQALIKSVGLRTDGRLDDRSYW 257


>03_01_0411 + 3168593-3168829,3169217-3170209
          Length = 409

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -3

Query: 47  CKPNTITYKAFIT 9
           CKPN+ TY AFI+
Sbjct: 163 CKPNSATYDAFIS 175


>02_05_0849 +
           32202610-32202880,32204234-32205711,32205993-32206143,
           32206378-32206559
          Length = 693

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = -3

Query: 197 SGSTEKWVISRHHYRSRNDPPCNNLLRLKLA*HNT*TY-CQVNR*FYLG 54
           SG T  W++ R    +  DPPC   + ++   H    Y C+  R   LG
Sbjct: 519 SGLTP-WIMFRSENHAMPDPPCRRAMSIEPCFHQAPFYDCKAKRNADLG 566


>12_01_0720 +
           6347765-6347839,6347936-6348004,6348221-6348256,
           6348342-6348647,6348887-6348901
          Length = 166

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 203 VFSGSTEKWVISRHHYRSRNDPPCNN 126
           V +GST+ W +  H   +   PPC +
Sbjct: 116 VTAGSTKPWTLPGHRRSTGGLPPCTS 141


>06_01_0768 + 5742938-5743196,5743291-5744729
          Length = 565

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = -3

Query: 194 GSTEKWVISRHHYRSRNDPPCNNLLRLKLA*HNT*TY-CQVNR 69
           G    WV+ +    +  DPPC   + ++   H    Y C+V R
Sbjct: 496 GGLSPWVMFKPENLTTPDPPCRRAVSMEPCLHGPPFYDCRVKR 538


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,302,835
Number of Sequences: 37544
Number of extensions: 56710
Number of successful extensions: 164
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 14,793,348
effective HSP length: 48
effective length of database: 12,991,236
effective search space used: 259824720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)