Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_I03
         (208 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR533491-1|CAG38522.1|  180|Homo sapiens MRPL18 protein.               32   0.39 
BC001623-1|AAH01623.1|  180|Homo sapiens mitochondrial ribosomal...    32   0.39 
AL139045-3|CAI19751.1|  180|Homo sapiens mitochondrial ribosomal...    32   0.39 
AL135914-8|CAI21852.1|  180|Homo sapiens mitochondrial ribosomal...    32   0.39 

>CR533491-1|CAG38522.1|  180|Homo sapiens MRPL18 protein.
          Length = 180

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 206 VVFSGSTEKWVISRHHYRSRNDPPCNNLLRL 114
           VV S ST +W I +H Y +RN   C ++ R+
Sbjct: 101 VVVSASTREWAIKKHLYSTRNVVACESIGRV 131


>BC001623-1|AAH01623.1|  180|Homo sapiens mitochondrial ribosomal
           protein L18 protein.
          Length = 180

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 206 VVFSGSTEKWVISRHHYRSRNDPPCNNLLRL 114
           VV S ST +W I +H Y +RN   C ++ R+
Sbjct: 101 VVVSASTREWAIKKHLYSTRNVVACESIGRV 131


>AL139045-3|CAI19751.1|  180|Homo sapiens mitochondrial ribosomal
           protein L18 protein.
          Length = 180

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 206 VVFSGSTEKWVISRHHYRSRNDPPCNNLLRL 114
           VV S ST +W I +H Y +RN   C ++ R+
Sbjct: 101 VVVSASTREWAIKKHLYSTRNVVACESIGRV 131


>AL135914-8|CAI21852.1|  180|Homo sapiens mitochondrial ribosomal
           protein L18 protein.
          Length = 180

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 206 VVFSGSTEKWVISRHHYRSRNDPPCNNLLRL 114
           VV S ST +W I +H Y +RN   C ++ R+
Sbjct: 101 VVVSASTREWAIKKHLYSTRNVVACESIGRV 131


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,740,623
Number of Sequences: 237096
Number of extensions: 340443
Number of successful extensions: 617
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 76,859,062
effective HSP length: 47
effective length of database: 65,715,550
effective search space used: 1380026550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)