Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_I03
         (208 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125459-8|AAD12840.2|  317|Caenorhabditis elegans Serpentine re...    27   2.4  
Z68760-10|CAL49442.1| 1427|Caenorhabditis elegans Hypothetical p...    25   9.7  
Z68760-9|CAJ80808.1| 1379|Caenorhabditis elegans Hypothetical pr...    25   9.7  
Z68760-8|CAA92996.1| 1398|Caenorhabditis elegans Hypothetical pr...    25   9.7  

>AF125459-8|AAD12840.2|  317|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 21 protein.
          Length = 317

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +2

Query: 44  YNKIPSKITDLPDNKFKYYVKQVLISKGYYRVDHYV 151
           ++++ S +T L      Y+    +I+K YY ++HY+
Sbjct: 88  FSRLFSDVTPLCPLVAPYFFTPSIITKAYYTINHYM 123


>Z68760-10|CAL49442.1| 1427|Caenorhabditis elegans Hypothetical
            protein F36H1.2c protein.
          Length = 1427

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/42 (26%), Positives = 24/42 (57%)
 Frame = +2

Query: 38   SVYNKIPSKITDLPDNKFKYYVKQVLISKGYYRVDHYVNDSD 163
            S+  + PS++  L D   + +  Q+L+S+ YY++  ++   D
Sbjct: 983  SLLEQWPSRMCWLIDRALEVHNNQLLLSEVYYQLKDHIPAQD 1024


>Z68760-9|CAJ80808.1| 1379|Caenorhabditis elegans Hypothetical protein
            F36H1.2b protein.
          Length = 1379

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/42 (26%), Positives = 24/42 (57%)
 Frame = +2

Query: 38   SVYNKIPSKITDLPDNKFKYYVKQVLISKGYYRVDHYVNDSD 163
            S+  + PS++  L D   + +  Q+L+S+ YY++  ++   D
Sbjct: 954  SLLEQWPSRMCWLIDRALEVHNNQLLLSEVYYQLKDHIPAQD 995


>Z68760-8|CAA92996.1| 1398|Caenorhabditis elegans Hypothetical protein
            F36H1.2a protein.
          Length = 1398

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/42 (26%), Positives = 24/42 (57%)
 Frame = +2

Query: 38   SVYNKIPSKITDLPDNKFKYYVKQVLISKGYYRVDHYVNDSD 163
            S+  + PS++  L D   + +  Q+L+S+ YY++  ++   D
Sbjct: 954  SLLEQWPSRMCWLIDRALEVHNNQLLLSEVYYQLKDHIPAQD 995


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,899,029
Number of Sequences: 27780
Number of extensions: 52869
Number of successful extensions: 115
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 12,740,198
effective HSP length: 48
effective length of database: 11,406,758
effective search space used: 228135160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)