Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_I02
         (376 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI000155C224 Cluster: PREDICTED: hypothetical protein;...    33   1.7  
UniRef50_Q0RSV0 Cluster: Pyruvate carboxylase 2; n=1; Frankia al...    33   1.7  

>UniRef50_UPI000155C224 Cluster: PREDICTED: hypothetical protein;
           n=2; Mammalia|Rep: PREDICTED: hypothetical protein -
           Ornithorhynchus anatinus
          Length = 266

 Score = 33.1 bits (72), Expect = 1.7
 Identities = 18/35 (51%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +1

Query: 7   GSAPAAGRLLNLAERAADLT-PAPASGSRQARARS 108
           G APA GR   +  RAAD+T PAPA   R+A  R+
Sbjct: 13  GGAPAEGRRPPIGRRAADVTGPAPAPWRRRAAMRA 47


>UniRef50_Q0RSV0 Cluster: Pyruvate carboxylase 2; n=1; Frankia alni
           ACN14a|Rep: Pyruvate carboxylase 2 - Frankia alni
           (strain ACN14a)
          Length = 1172

 Score = 33.1 bits (72), Expect = 1.7
 Identities = 18/33 (54%), Positives = 20/33 (60%)
 Frame = +1

Query: 4   RGSAPAAGRLLNLAERAADLTPAPASGSRQARA 102
           + SA   GR L   ERAADL  A AS SR+A A
Sbjct: 167 KASAGGGGRGLRRVERAADLADAVASASREAAA 199


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,484,675
Number of Sequences: 1657284
Number of extensions: 2526253
Number of successful extensions: 8263
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8177
length of database: 575,637,011
effective HSP length: 91
effective length of database: 424,824,167
effective search space used: 14019197511
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)