Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_I02
         (376 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016419-3|AAG24048.1|  529|Caenorhabditis elegans Hypothetical ...    28   2.5  
AF022967-12|AAB69873.2|  467|Caenorhabditis elegans Hypothetical...    27   5.8  
AF016419-1|AAG24051.1|  499|Caenorhabditis elegans Hypothetical ...    27   5.8  

>AF016419-3|AAG24048.1|  529|Caenorhabditis elegans Hypothetical
           protein F07G11.3 protein.
          Length = 529

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 361 FIFFLHIFK*YNATINKTTTNDYNFFY 281
           F+F +HI+K Y A +N    +  N FY
Sbjct: 184 FLFAVHIYKKYGAFVNLYLVSSVNTFY 210


>AF022967-12|AAB69873.2|  467|Caenorhabditis elegans Hypothetical
           protein C13A2.1 protein.
          Length = 467

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 361 FIFFLHIFK*YNATINKTTTNDYNFFY 281
           F+F +HI+K Y A +N    +  N FY
Sbjct: 179 FLFAVHIYKKYGAFVNLYLISAVNTFY 205


>AF016419-1|AAG24051.1|  499|Caenorhabditis elegans Hypothetical
           protein F07G11.4 protein.
          Length = 499

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 361 FIFFLHIFK*YNATINKTTTNDYNFFY 281
           F+F +HI+K Y A +N    +  N FY
Sbjct: 167 FLFAVHIYKKYGAFVNLYLISAVNTFY 193


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,789,795
Number of Sequences: 27780
Number of extensions: 62085
Number of successful extensions: 249
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 546325158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)