Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_H24
(363 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC577.15c |||NASP family histone binding protein|Schizosacchar... 28 0.39
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc... 27 0.90
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce... 27 1.2
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 26 1.6
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 26 2.1
SPCC645.09 |mrpl37||mitochondrial ribosomal protein subunit L37|... 25 2.7
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 25 2.7
SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyce... 25 3.6
SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit S23... 25 4.8
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb... 25 4.8
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 24 6.3
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz... 24 6.3
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 24 8.3
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 24 8.3
SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual 24 8.3
>SPBC577.15c |||NASP family histone binding
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 28.3 bits (60), Expect = 0.39
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 86 TSKLSPAEIEDLNNENKAWNVLCILNVLHS 175
T++ SPA ED ++ N AW VL + V+ S
Sbjct: 153 TNEASPASEEDEDDFNVAWEVLDLTRVMQS 182
>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 767
Score = 27.1 bits (57), Expect = 0.90
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 17 QWLWELIDEFVYQFQS-FAQYRSRTSKLSPAEIEDLNNEN 133
+W WEL+DE+ + +S Q+ + TS++ +DL +
Sbjct: 674 KWFWELMDEWSNEKKSRLLQFTTGTSRIPVNGFKDLQGSD 713
>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 415
Score = 26.6 bits (56), Expect = 1.2
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = -1
Query: 258 PNSPATESGSPPAAYTSSCFLMLDLS-TRECNTLRIQSTFHALFSLFKSSISAGL 97
PN ES PPA + +S F+ L ++ T EC I+S H +SL S+ GL
Sbjct: 135 PNPLEIESALPPAMFDAS-FIFLPINDTNECG---IESGSH--WSLLVVSVEKGL 183
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 26.2 bits (55), Expect = 1.6
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -2
Query: 338 HNHQVRSANPAIQPRKNIPASCRVNVSQTRPPRSQDPHQQH-TPL 207
++ Q R A P+ PR P S +VN ++ P QH TPL
Sbjct: 629 YSFQPRPATPSNPPRSLPPPSGQVNAPMSQTPNPISFAYQHGTPL 673
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 25.8 bits (54), Expect = 2.1
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = -2
Query: 299 PRKNIPASCRVNVSQTRPPRSQDPHQQHTPLVA 201
P K IP R N + PH +HT VA
Sbjct: 22 PPKRIPVPSRQNKIEENSTTKNFPHSRHTSTVA 54
>SPCC645.09 |mrpl37||mitochondrial ribosomal protein subunit
L37|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 25.4 bits (53), Expect = 2.7
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 2 HEVPDQWLWELIDE 43
HE P+ WLW L+DE
Sbjct: 101 HEYPE-WLWSLLDE 113
>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 612
Score = 25.4 bits (53), Expect = 2.7
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2
Query: 140 WNVLCILNVLHSLVDKSNIKKQLEVYAAGGDPDSVAGEFGRHSLY 274
W+ +C+ L + D S K + V GG G FG HSL+
Sbjct: 215 WHYMCMF--LDTRYDPSTQKIRGHVALGGGTDMHKLGVFGSHSLH 257
>SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 393
Score = 25.0 bits (52), Expect = 3.6
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +2
Query: 56 FQSFAQYRSRTSKLSPAEIEDLNNENKAW--NVLCILNVLHSLVDKS 190
+ +FA+Y S + ++DL N+ +W N + NV+++L DKS
Sbjct: 290 YTTFAEYYMDLLDNSESNVDDLINKASSWLNNSVDTWNVIYTL-DKS 335
>SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit
S23|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 24.6 bits (51), Expect = 4.8
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 155 ILNVLHSLVDKSNIKKQLEVY 217
+L+ LH L+ SN K LE++
Sbjct: 294 LLSFLHKLIASSNAPKSLEIF 314
>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 24.6 bits (51), Expect = 4.8
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +3
Query: 210 RCMLLVGILTPWRASLGDIHSTRCWDIFPWLDCWVCT 320
RC L V + W AS GD R W++ W C+
Sbjct: 383 RC-LSVHVSGNWLASGGDDGVLRIWEVMTGRCVWKCS 418
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 24.2 bits (50), Expect = 6.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 89 SKLSPAEIEDLNNENKAWNVLCILNVLH 172
SK P +I L ENK + + CI +VL+
Sbjct: 1426 SKKVPIQIFFLQGENKNYVLFCIHHVLY 1453
>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 24.2 bits (50), Expect = 6.3
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 262 SPKLARHGVRIPTSSIHL*LLLDVGFVNKRM*YIKNTKY 146
SPKL++ V P+SSI + V + + M ++ KY
Sbjct: 332 SPKLSQSAVGHPSSSIPAAAMHKVSYSDDLMRFVAREKY 370
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 23.8 bits (49), Expect = 8.3
Identities = 10/41 (24%), Positives = 18/41 (43%)
Frame = +3
Query: 123 TMRTRHGMYFVFLMYYILLLTNPTSRSN*RCMLLVGILTPW 245
T+ T +YF YY+ + + RC+ + G + W
Sbjct: 451 TLSTLIPIYFYVAFYYLQNIPIQKKYESYRCLFISGTICQW 491
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 23.8 bits (49), Expect = 8.3
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 122 NNENKAWNVLCILNVLHSLVDKSNIKKQLEVYAAGGDPD 238
NN+N VLC+ + HSL+ K+ + + A PD
Sbjct: 902 NNDNHC--VLCLQSASHSLMKKTVEGNWVHLICASWTPD 938
>SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 276
Score = 23.8 bits (49), Expect = 8.3
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 162 MYYILLLTNPTSRSN*RCMLLVGILTPWRASLGDIHSTRCWDI-FP 296
++ + + PT + + + IL P + LG + S C+DI FP
Sbjct: 117 LFDVEIKNGPTLKESNTTLRGEAILPPCKTPLGKVGSAICFDIRFP 162
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,594,766
Number of Sequences: 5004
Number of extensions: 32532
Number of successful extensions: 98
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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