Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_H24
(363 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0906 - 7124686-7124730,7124854-7124925,7125257-7125383,712... 93 8e-20
05_03_0041 - 7662094-7662138,7662269-7662340,7663144-7663179,766... 87 4e-18
08_01_0132 + 1055977-1056483,1058083-1058186,1058330-1058385,105... 31 0.28
09_01_0110 - 1714783-1714803,1718645-1719370 29 1.5
03_05_0086 - 20642873-20643033,20643384-20643504,20643698-206437... 29 1.5
05_01_0217 + 1630083-1630205,1630467-1630710,1631695-1632508,163... 28 2.6
03_02_0651 + 10183050-10184167,10184350-10184974,10185023-101852... 28 2.6
07_03_0069 + 13041063-13041577,13041647-13042231,13042285-13042540 27 4.5
02_04_0367 + 22399785-22399899,22400911-22401102,22401990-224021... 27 4.5
01_03_0194 + 13645418-13645790,13645879-13647653 27 4.5
05_07_0227 - 28523385-28524278 27 6.0
05_01_0190 + 1366791-1366817,1367536-1367616,1367858-1367900,136... 27 6.0
02_03_0329 + 17806787-17807294,17819559-17819710 27 6.0
02_01_0388 + 2812235-2815003 27 6.0
08_02_0758 + 20848078-20849579,20849660-20849850,20849944-208501... 26 7.9
05_03_0458 + 14280953-14281866,14281964-14282912 26 7.9
04_04_0217 - 23693124-23693535,23693965-23694052,23694428-236945... 26 7.9
03_06_0620 - 35142280-35142294,35143149-35143294,35144826-35145045 26 7.9
03_05_0774 - 27615899-27617134 26 7.9
03_05_0380 + 23636675-23636845,23637646-23637678,23637794-23638132 26 7.9
>01_01_0906 -
7124686-7124730,7124854-7124925,7125257-7125383,
7125424-7125572,7126126-7126465,7126759-7127090,
7127327-7127860
Length = 532
Score = 92.7 bits (220), Expect = 8e-20
Identities = 47/121 (38%), Positives = 68/121 (56%), Gaps = 3/121 (2%)
Frame = +2
Query: 5 EVPDQWLWELIDEFVYQFQSFAQYRSRTSKLSPAEIEDLNNENKAWNVLCILNVLHSLVD 184
++P+QWLW+++DEFVYQFQSF QYR++ S E+ L +KAWNV +LN L +LV+
Sbjct: 135 QLPNQWLWDMVDEFVYQFQSFCQYRAKLKNKSDDELHQLKQFDKAWNVYGVLNYLQALVE 194
Query: 185 KSNIKKQLEVYAAGGDPDSVAGEF---GRHSLYKMLGYFXXXXXXXXXXXXXDYDRAIKV 355
KS I + LE G + + + G ++ KMLGY+ DY +K
Sbjct: 195 KSMIAQILEREKEGLEQFTATDGYDYQGGSNVLKMLGYYSMIGLLRIHCLLGDYRTGLKC 254
Query: 356 L 358
L
Sbjct: 255 L 255
>05_03_0041 -
7662094-7662138,7662269-7662340,7663144-7663179,
7663356-7663449,7663533-7663681,7664525-7664864,
7666417-7666748,7667348-7667821
Length = 513
Score = 87.0 bits (206), Expect = 4e-18
Identities = 45/121 (37%), Positives = 68/121 (56%), Gaps = 3/121 (2%)
Frame = +2
Query: 5 EVPDQWLWELIDEFVYQFQSFAQYRSRTSKLSPAEIEDLNNENKAWNVLCILNVLHSLVD 184
++P+QWLW+++DEFVYQFQSF QYR++ + EI L ++AW+V +LN L +LV+
Sbjct: 115 QLPNQWLWDMVDEFVYQFQSFCQYRAKLKNKTHEEIALLKQYDQAWSVYGVLNYLKALVE 174
Query: 185 KSNIKKQLEVYAAGGDPDSVAGEF---GRHSLYKMLGYFXXXXXXXXXXXXXDYDRAIKV 355
KS I + LE G + + + G ++ KMLGY+ DY +K
Sbjct: 175 KSMIGEILEREKVGLEQFTATDGYDYEGGSNVLKMLGYYSMIGLLRVHCLLGDYHTGLKC 234
Query: 356 L 358
L
Sbjct: 235 L 235
>08_01_0132 +
1055977-1056483,1058083-1058186,1058330-1058385,
1058534-1058688,1058842-1058955,1059207-1059449
Length = 392
Score = 31.1 bits (67), Expect = 0.28
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -1
Query: 333 SPSKECKPSNPTKEKYPSIL*SECLPNSPATESGSP-PAAYTSSC 202
SPS S+ + PS+ P SP S P PAA+T+SC
Sbjct: 91 SPSSYSSSSSSSSSSSPSVRHYHYYPPSPTRSSSPPTPAAHTTSC 135
>09_01_0110 - 1714783-1714803,1718645-1719370
Length = 248
Score = 28.7 bits (61), Expect = 1.5
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = -1
Query: 348 IARS*SPSKECKPSNPTKEKYPSIL*SECLPNSPATESGSPPAAYTSS 205
+A SPS KP NP + K LPN P T+ +PP SS
Sbjct: 1 MAEKQSPSSGVKPPNPPRAK---------LPNPPGTKHPNPPGTKQSS 39
>03_05_0086 -
20642873-20643033,20643384-20643504,20643698-20643744,
20643882-20643921,20644331-20644418,20644949-20645161,
20645589-20645628,20646332-20646416
Length = 264
Score = 28.7 bits (61), Expect = 1.5
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -1
Query: 306 NPTKEKYP-SIL*SECLPNSPATESGSP 226
NPT+ YP S+L S P+ P++ SGSP
Sbjct: 55 NPTQPWYPPSVLGSSSHPSLPSSSSGSP 82
>05_01_0217 +
1630083-1630205,1630467-1630710,1631695-1632508,
1632775-1632844,1633007-1633239,1633345-1633564
Length = 567
Score = 27.9 bits (59), Expect = 2.6
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Frame = -2
Query: 188 ICQQENVIH*EYKVHSMPCSHCSNLRFQQGSV*RYETCIG---QKI-EIDKQIHQSIPRA 21
+ + E+ + E + M C+ +++ + V YE C+ +K+ E D + QS P
Sbjct: 92 LVKPEDCVRRERALTQMECAASLSIKLDKKHVEHYEVCVSELREKVAEFDSKASQSWPAT 151
Query: 20 IDQAP 6
I +P
Sbjct: 152 ITDSP 156
>03_02_0651 +
10183050-10184167,10184350-10184974,10185023-10185208,
10185325-10185660
Length = 754
Score = 27.9 bits (59), Expect = 2.6
Identities = 13/30 (43%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Frame = +2
Query: 182 DKSNIKKQLEVYAAGGDPDSV-AGEFGRHS 268
D + IKK +++Y+A G DS+ +G FG++S
Sbjct: 168 DNNEIKKAVDMYSALGPSDSLDSGVFGQNS 197
>07_03_0069 + 13041063-13041577,13041647-13042231,13042285-13042540
Length = 451
Score = 27.1 bits (57), Expect = 4.5
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = -1
Query: 324 KECKPS-NPTKEKYPSIL*SECLPNSPATESGSPPAAYTSSCFLMLDLSTRECNTLRIQS 148
K+ KP P + P + S P + ++ + PP Y + +L + T ECN + +
Sbjct: 308 KQYKPRLQPRAPRAPRTVPSSH-PGASSSPAPPPPHGYDPNASFILTMLTLECNPMNTST 366
Query: 147 TFHAL 133
AL
Sbjct: 367 RHEAL 371
>02_04_0367 +
22399785-22399899,22400911-22401102,22401990-22402117,
22402229-22402384,22402948-22403206,22403762-22403836,
22404288-22404610,22405041-22405274,22405355-22405542,
22405734-22405869,22405963-22406071,22406988-22407090,
22407188-22407374,22407467-22407565,22407666-22407724,
22408581-22408686,22408798-22408962
Length = 877
Score = 27.1 bits (57), Expect = 4.5
Identities = 11/45 (24%), Positives = 24/45 (53%)
Frame = +3
Query: 213 CMLLVGILTPWRASLGDIHSTRCWDIFPWLDCWVCTPYLVIMTEL 347
C L++GIL ++ I ++ ++ WL CW + + ++ E+
Sbjct: 507 CFLILGILASSCVAIF-IQASSALAVYVWLSCWFLSLFTLMPAEI 550
>01_03_0194 + 13645418-13645790,13645879-13647653
Length = 715
Score = 27.1 bits (57), Expect = 4.5
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +2
Query: 110 IEDLNNENKAWNVLCIL--NVLHSLVDKSNIKKQLEVYAAGGD 232
++ + NENK WN+L ++ + N K + A GG+
Sbjct: 649 VDGIQNENKGWNMLAEFWSEMMLYVAPSDNTKAHAKAIARGGE 691
>05_07_0227 - 28523385-28524278
Length = 297
Score = 26.6 bits (56), Expect = 6.0
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -2
Query: 251 RPPRSQDPHQQHTP 210
+PPR Q P QQH P
Sbjct: 75 KPPRQQHPQQQHPP 88
>05_01_0190 +
1366791-1366817,1367536-1367616,1367858-1367900,
1368104-1368182,1368291-1368450,1368565-1368692,
1369134-1369202,1369796-1369883,1370516-1370591,
1370767-1370840,1372635-1372742,1373783-1373944,
1374179-1374283,1374447-1374527,1374603-1375803,
1376654-1376750,1378086-1378160,1378461-1378623
Length = 938
Score = 26.6 bits (56), Expect = 6.0
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = -1
Query: 258 PNSPATESGSPPAAYTSSCFLMLDLSTR---ECNTLRIQSTF 142
P P+TE+G P +S FL ++ R + N RI++ F
Sbjct: 812 PQIPSTETGIEPLTDAASAFLSTNIERRSGADLNPRRIENIF 853
>02_03_0329 + 17806787-17807294,17819559-17819710
Length = 219
Score = 26.6 bits (56), Expect = 6.0
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 348 IARS*SPSKECKPSNPTKEKYPS 280
+A+ SPS KP NP K+PS
Sbjct: 1 MAKKQSPSSAAKPPNPLGSKHPS 23
>02_01_0388 + 2812235-2815003
Length = 922
Score = 26.6 bits (56), Expect = 6.0
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +2
Query: 119 LNNENKAWNVLCILNVLHSLVDKSNIKKQLEVYAAGGDPD 238
+ N KAW++ C ++ L D+SN L G+ D
Sbjct: 202 IENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLGNLD 241
>08_02_0758 +
20848078-20849579,20849660-20849850,20849944-20850179,
20850254-20850973
Length = 882
Score = 26.2 bits (55), Expect = 7.9
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = -2
Query: 332 HQVRSANPAIQ---PRKNIPASCRVNVSQTRPPRSQDPHQQHTPLVAS 198
HQ RS PA PRK +P++ R +++ R P + HT + S
Sbjct: 89 HQARSEAPAPLVHVPRKGMPSTHRSHIAPARSPVHKVKDGGHTKIPRS 136
>05_03_0458 + 14280953-14281866,14281964-14282912
Length = 620
Score = 26.2 bits (55), Expect = 7.9
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -1
Query: 342 RS*SPSKECKPSNPTKEKYPSIL*SECLPNSPATESGSPP 223
R+ +PS S PT P++ S +SP++ SPP
Sbjct: 27 RNAAPSPPSSNSTPTSSTTPTVPPSLTTTSSPSSSPSSPP 66
>04_04_0217 -
23693124-23693535,23693965-23694052,23694428-23694503,
23694729-23694787,23694853-23694934,23695533-23696577,
23696700-23696998
Length = 686
Score = 26.2 bits (55), Expect = 7.9
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 241 RGGRVWETFTLQDAGIF 291
RG +W+TFT Q G+F
Sbjct: 458 RGPSIWDTFTYQHPGMF 474
>03_06_0620 - 35142280-35142294,35143149-35143294,35144826-35145045
Length = 126
Score = 26.2 bits (55), Expect = 7.9
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -1
Query: 258 PNSPATESGSPPAAYTSSCF-LMLDLSTRECNTLRIQSTFHALFSLFKS 115
P+SP T+SG PP + + LD+S R + TF L LF+S
Sbjct: 28 PSSPPTKSGIPPRYDLDAKWDACLDISIRRVAYSTLGGTFAGLL-LFRS 75
>03_05_0774 - 27615899-27617134
Length = 411
Score = 26.2 bits (55), Expect = 7.9
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -2
Query: 311 PAIQPRKNIPASCRVNVSQTRPPRSQDPHQQH 216
P ++ + PA+ V V TRPP P +QH
Sbjct: 355 PVVEAKSTAPAASVV-VGPTRPPSIGGPRRQH 385
>03_05_0380 + 23636675-23636845,23637646-23637678,23637794-23638132
Length = 180
Score = 26.2 bits (55), Expect = 7.9
Identities = 19/74 (25%), Positives = 33/74 (44%)
Frame = -2
Query: 344 LGHNHQVRSANPAIQPRKNIPASCRVNVSQTRPPRSQDPHQQHTPLVAS*CWICQQENVI 165
+G + +R A + P K+ + + +++T PP S VA C +C +E +
Sbjct: 107 MGRDALLRDAGVVVLPEKSSSSGSSMAMAKTNPPGS----------VAVTCNVCFEEYPL 156
Query: 164 H*EYKVHSMPCSHC 123
V +M C HC
Sbjct: 157 G---SVSAMDCGHC 167
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,438,356
Number of Sequences: 37544
Number of extensions: 215835
Number of successful extensions: 708
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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