Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_H24
         (363 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28739-15|AAK68188.1|  537|Caenorhabditis elegans Hypothetical p...   111   1e-25
U28739-14|AAM54207.1|  535|Caenorhabditis elegans Hypothetical p...   111   1e-25
AF043697-2|AAB97556.1|  820|Caenorhabditis elegans Patched relat...    29   1.00 
AL021503-9|CAA16417.2|  572|Caenorhabditis elegans Hypothetical ...    29   1.3  
Z50756-2|CAA90638.1|  473|Caenorhabditis elegans Hypothetical pr...    27   3.0  
AF067608-5|AAK95865.1|  523|Caenorhabditis elegans Hypothetical ...    27   3.0  
AF016674-3|AAB66128.1|  558|Caenorhabditis elegans Hypothetical ...    27   4.0  
Z81048-1|CAB02839.1|  587|Caenorhabditis elegans Hypothetical pr...    27   5.3  
AB033380-1|BAA92264.1|  587|Caenorhabditis elegans kinesin like ...    27   5.3  
Z81558-1|CAB04539.1|  318|Caenorhabditis elegans Hypothetical pr...    26   7.0  
AF098996-7|AAC68708.2|  382|Caenorhabditis elegans Serpentine re...    26   7.0  
AC024772-4|AAL32240.2|  441|Caenorhabditis elegans Hypothetical ...    26   7.0  
AF040653-8|AAB95031.1|  532|Caenorhabditis elegans F-box b prote...    26   9.3  
AC093703-3|AAL00866.2| 1319|Caenorhabditis elegans Hypothetical ...    26   9.3  

>U28739-15|AAK68188.1|  537|Caenorhabditis elegans Hypothetical
           protein C17G10.9a protein.
          Length = 537

 Score =  111 bits (268), Expect = 1e-25
 Identities = 54/121 (44%), Positives = 77/121 (63%), Gaps = 3/121 (2%)
 Frame = +2

Query: 8   VPDQWLWELIDEFVYQFQSFAQYRSRTSKLSPAEIEDLNN--ENK-AWNVLCILNVLHSL 178
           +P+ WLW++IDEFVYQFQ+F  Y++   K +  E+EDL N  EN+ AWN+  +LN+L+SL
Sbjct: 143 LPNVWLWDIIDEFVYQFQAFCLYKANPGKRNADEVEDLINIEENQNAWNIYPVLNILYSL 202

Query: 179 VDKSNIKKQLEVYAAGGDPDSVAGEFGRHSLYKMLGYFXXXXXXXXXXXXXDYDRAIKVL 358
           + KS I +QL+      +PDSVA EFG+  LY  LGYF             DY +A+K +
Sbjct: 203 LSKSQIVEQLKALKEKRNPDSVADEFGQSDLYFKLGYFALIGLLRTHVLLGDYHQALKTV 262

Query: 359 E 361
           +
Sbjct: 263 Q 263


>U28739-14|AAM54207.1|  535|Caenorhabditis elegans Hypothetical
           protein C17G10.9b protein.
          Length = 535

 Score =  111 bits (268), Expect = 1e-25
 Identities = 54/121 (44%), Positives = 77/121 (63%), Gaps = 3/121 (2%)
 Frame = +2

Query: 8   VPDQWLWELIDEFVYQFQSFAQYRSRTSKLSPAEIEDLNN--ENK-AWNVLCILNVLHSL 178
           +P+ WLW++IDEFVYQFQ+F  Y++   K +  E+EDL N  EN+ AWN+  +LN+L+SL
Sbjct: 141 LPNVWLWDIIDEFVYQFQAFCLYKANPGKRNADEVEDLINIEENQNAWNIYPVLNILYSL 200

Query: 179 VDKSNIKKQLEVYAAGGDPDSVAGEFGRHSLYKMLGYFXXXXXXXXXXXXXDYDRAIKVL 358
           + KS I +QL+      +PDSVA EFG+  LY  LGYF             DY +A+K +
Sbjct: 201 LSKSQIVEQLKALKEKRNPDSVADEFGQSDLYFKLGYFALIGLLRTHVLLGDYHQALKTV 260

Query: 359 E 361
           +
Sbjct: 261 Q 261


>AF043697-2|AAB97556.1|  820|Caenorhabditis elegans Patched related
           family protein 11 protein.
          Length = 820

 Score = 29.1 bits (62), Expect = 1.00
 Identities = 16/63 (25%), Positives = 30/63 (47%)
 Frame = +3

Query: 147 YFVFLMYYILLLTNPTSRSN*RCMLLVGILTPWRASLGDIHSTRCWDIFPWLDCWVCTPY 326
           +F+ L   I+++   +S      ++   +LTP  A++    +  CW  FP       TP+
Sbjct: 248 FFLLLTQVIIVIVRLSSVKMAFYLVATSLLTPMAATVASFGAI-CWMGFPSFSIQCVTPF 306

Query: 327 LVI 335
           LV+
Sbjct: 307 LVL 309


>AL021503-9|CAA16417.2|  572|Caenorhabditis elegans Hypothetical
           protein Y68A4A.5 protein.
          Length = 572

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 19/68 (27%), Positives = 28/68 (41%)
 Frame = -1

Query: 282 SIL*SECLPNSPATESGSPPAAYTSSCFLMLDLSTRECNTLRIQSTFHALFSLFKSSISA 103
           SI    CLP    T    P  A+ +SC      ++  C TL ++ T +A F    +   A
Sbjct: 351 SIAPQTCLPCQTCTSFTDPMGAH-ASCIATYGTNSDGCTTLAVKCTINAGFECDIAKCMA 409

Query: 102 GLSLEVRD 79
             + E  D
Sbjct: 410 NAAYECYD 417


>Z50756-2|CAA90638.1|  473|Caenorhabditis elegans Hypothetical
           protein T08D10.3 protein.
          Length = 473

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 119 LNNENKAWNVLCILNVLHSLVDKSNIKKQLEV 214
           LNN N+  NV C+L  L ++     + KQL V
Sbjct: 19  LNNLNRNQNVECVLEELSTMKIPKTVAKQLSV 50


>AF067608-5|AAK95865.1|  523|Caenorhabditis elegans Hypothetical
           protein B0511.8 protein.
          Length = 523

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 293 KNIPASCRVNVSQTRPPRSQDPHQQHTP 210
           +N+PA      +  RPP  + PHQ H P
Sbjct: 40  ENVPAKSANASTVYRPPYYRKPHQHHEP 67


>AF016674-3|AAB66128.1|  558|Caenorhabditis elegans Hypothetical
           protein C03H5.5 protein.
          Length = 558

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 7/19 (36%), Positives = 16/19 (84%)
 Frame = +2

Query: 8   VPDQWLWELIDEFVYQFQS 64
           +PD W+ ++++E+V+Q Q+
Sbjct: 194 LPDYWILDIMEEYVFQIQT 212


>Z81048-1|CAB02839.1|  587|Caenorhabditis elegans Hypothetical
           protein C41G7.2 protein.
          Length = 587

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -2

Query: 326 VRSANPAIQPRKNIPASCRVNVSQTRPP 243
           ++ A+PA  PR++ P    +  +  RPP
Sbjct: 31  IKEADPATIPRQSAPGGITIGAAACRPP 58


>AB033380-1|BAA92264.1|  587|Caenorhabditis elegans kinesin like
           protein protein.
          Length = 587

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -2

Query: 326 VRSANPAIQPRKNIPASCRVNVSQTRPP 243
           ++ A+PA  PR++ P    +  +  RPP
Sbjct: 31  IKEADPATIPRQSAPGGITIGAAACRPP 58


>Z81558-1|CAB04539.1|  318|Caenorhabditis elegans Hypothetical
           protein F59D12.1 protein.
          Length = 318

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +3

Query: 231 ILTPWRASLGDIHSTRCWDIFPWL-DCWVCTPYLV 332
           ++ P R S   +   +CW +F WL    +C P +V
Sbjct: 119 MMKPSRYSEQSLTRCKCWIVFSWLTSMLLCCPIIV 153


>AF098996-7|AAC68708.2|  382|Caenorhabditis elegans Serpentine
           receptor, class w protein60 protein.
          Length = 382

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 14/62 (22%), Positives = 31/62 (50%)
 Frame = +3

Query: 162 MYYILLLTNPTSRSN*RCMLLVGILTPWRASLGDIHSTRCWDIFPWLDCWVCTPYLVIMT 341
           M+++ ++T  + R+N   +L++GI      ++  +      D F ++ C    PY  ++ 
Sbjct: 53  MFHLAIITRKSMRTNSVYVLMIGITISDMFTMFMVVYNNFNDFFKFVFCSFPDPYWKVLL 112

Query: 342 EL 347
           EL
Sbjct: 113 EL 114


>AC024772-4|AAL32240.2|  441|Caenorhabditis elegans Hypothetical
           protein Y40C5A.4b protein.
          Length = 441

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = +2

Query: 194 IKKQLEVYAAGGDPDSVAGEFGRHSLYKMLGYFXXXXXXXXXXXXXDYDRAIKVL 358
           I+K + V+      +++ G+F + SL+ +L YF             D D+ +K L
Sbjct: 213 IRKIVTVFLPFAGKENIIGKFFKSSLFSVLAYF--NAAIVMNVRRTDRDQTVKAL 265


>AF040653-8|AAB95031.1|  532|Caenorhabditis elegans F-box b protein
           protein 50 protein.
          Length = 532

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +1

Query: 253 VWET-FTLQDAGIFFLGWIAGF 315
           +W+T  T +D  +F   WIAGF
Sbjct: 256 IWDTQLTEKDINVFLKHWIAGF 277


>AC093703-3|AAL00866.2| 1319|Caenorhabditis elegans Hypothetical
           protein Y20F4.4 protein.
          Length = 1319

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = -2

Query: 338 HNHQVRSANPAIQP--RKNIPASCRVNVSQTRPPRSQDPHQQHTPLV 204
           H+      NP   P   +N PA+ + N S +RP R +   + + P V
Sbjct: 236 HHQNGGGWNPCANPPSARNAPATVKDNRSSSRPRRDRSQPRSYQPPV 282


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,779,245
Number of Sequences: 27780
Number of extensions: 183329
Number of successful extensions: 594
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)