Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_H23
(240 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe... 39 8e-05
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 25 1.0
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi... 25 1.3
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 24 2.3
SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit |Schi... 24 3.1
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa... 24 3.1
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 23 4.1
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 23 5.4
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac... 23 5.4
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 23 5.4
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 23 5.4
SPBC32F12.05c |cwf12||complexed with Cdc5 protein Cwf12 |Schizos... 23 7.1
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo... 23 7.1
SPBC3B9.10 |vti1||SNARE Vti1|Schizosaccharomyces pombe|chr 2|||M... 23 7.1
SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase |Schizosaccha... 23 7.1
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 22 9.4
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb... 22 9.4
SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces pom... 22 9.4
SPAC23G3.07c |snf30||SWI/SNF complex subunit Snf30|Schizosacchar... 22 9.4
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 22 9.4
>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 426
Score = 39.1 bits (87), Expect = 8e-05
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +2
Query: 11 NFSVSXXXXXXXXXXXXTREMLKPFDPVLKFFTVKSVIFLSFWQGVALAI 160
N S++ E L PF P KF +VK++IF S+WQ L+I
Sbjct: 177 NISITLSLYSLTTFWVCLHEELAPFRPFPKFLSVKAIIFASYWQQTVLSI 226
>SPAC23D3.13c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1616
Score = 25.4 bits (53), Expect = 1.0
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = -1
Query: 222 PAVVGISSASIIGDITSAFSRIASATPCQNERKIT 118
P+V+G+ S ++ D +S +S P + K++
Sbjct: 354 PSVIGVGSRVVLADTFEDYSSTSSGNPPSSMEKVS 388
>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1419
Score = 25.0 bits (52), Expect = 1.3
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 113 KSVIFLSFWQGVALAILEKAEVISPII 193
+ +I+LS + AL +LE A V+SP +
Sbjct: 375 RQIIYLSVAKPRALVVLEDAGVLSPTV 401
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 24.2 bits (50), Expect = 2.3
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -1
Query: 213 VGISSASIIGDITSAFSRIASATPCQNERKITD 115
+ I I +I F ++A+ T C+ RK+T+
Sbjct: 435 IDIEKEKTIEEIAMGFIQVANETMCRPIRKLTE 467
>SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 23.8 bits (49), Expect = 3.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -2
Query: 221 PPLSVYRPRRLSAISPPLSPG*RALHLA 138
P +++P+ + AI LS G A HLA
Sbjct: 115 PNFWIFKPKSIQAIHVDLSHGVTASHLA 142
>SPAC1783.07c |pap1|caf3, caf3|transcription factor
Caf3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 552
Score = 23.8 bits (49), Expect = 3.1
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 145 CSARYPGESGGDIADNRR 198
CSA GE+G D+AD ++
Sbjct: 259 CSALSNGENGEDVADGKQ 276
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 23.4 bits (48), Expect = 4.1
Identities = 9/35 (25%), Positives = 21/35 (60%)
Frame = -1
Query: 105 KNFSTGSNGFSISLVAPRNRNKPYRAKLTEKLSSC 1
+ F+ ++ L++ + N+ Y+A+L +LS+C
Sbjct: 3036 EEFNAKIEDMALKLLSEKYDNEAYQAELFYRLSNC 3070
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 23.0 bits (47), Expect = 5.4
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -1
Query: 237 PAETVPAVVGISSASIIGDITSAFSRI 157
PAE P ++G+S +G+ + A S +
Sbjct: 273 PAELTPDMIGLSGVHQLGNTSLAVSLV 299
>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 23.0 bits (47), Expect = 5.4
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Frame = -1
Query: 135 NERK----ITDLTVKNFSTGSNGFSISLVAPRNRNKPYRA 28
NERK + +L VKN+S ++ +L PRN ++P A
Sbjct: 607 NERKASSQVKELEVKNYSKSTDLLKKTLRIPRN-DEPLEA 645
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 23.0 bits (47), Expect = 5.4
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -1
Query: 135 NERKITDLTVKNFS 94
N R + D+TVKN+S
Sbjct: 907 NSRDVIDMTVKNYS 920
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 23.0 bits (47), Expect = 5.4
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -1
Query: 216 VVGISSASIIGDITSAFSRIASATPCQNERKITDL-TVKNFS 94
V G+SS+ D+ S FSR S + + K T + T++ F+
Sbjct: 9 VGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFA 50
>SPBC32F12.05c |cwf12||complexed with Cdc5 protein Cwf12
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 22.6 bits (46), Expect = 7.1
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1
Query: 198 ASIIGDITSAFSRIASAT 145
AS++ DI+ SRI SAT
Sbjct: 34 ASVVKDISRKISRIQSAT 51
>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
Length = 686
Score = 22.6 bits (46), Expect = 7.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 82 RLQHLPGGAEEQEQTV*SQAHRE 14
R +LP E +E+TV S HR+
Sbjct: 20 RTNNLPLNPEVKEETVVSSTHRQ 42
>SPBC3B9.10 |vti1||SNARE Vti1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 214
Score = 22.6 bits (46), Expect = 7.1
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -2
Query: 47 GTNRIEPSSQR 15
GTNR+E SSQR
Sbjct: 120 GTNRLEQSSQR 130
>SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 363
Score = 22.6 bits (46), Expect = 7.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 120 TDLTVKNFSTGSNGFSISLVAPRNRNKPYRAK 25
TD+ + S G+SI+LVA N+ Y A+
Sbjct: 227 TDVRRGDECGNSPGYSITLVAETNKGCSYAAE 258
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 22.2 bits (45), Expect = 9.4
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 72 ISLVAPRNRNKPYRAKLTEKLS 7
+SLVAP + P R L KLS
Sbjct: 1585 VSLVAPTFNSFPLRVLLDSKLS 1606
>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 22.2 bits (45), Expect = 9.4
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -1
Query: 225 VPAVVGISSASIIGDITSAFSRIASATPCQNE 130
V VV SSA++ GD T + I C N+
Sbjct: 121 VKTVVFSSSATVYGDATRFDNMIPIPESCPND 152
>SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 188
Score = 22.2 bits (45), Expect = 9.4
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -1
Query: 90 GSNGFSISLVAPRNRNKPYRAKLT-EKLSSC 1
GSNGF + + N +K A++T E+ +SC
Sbjct: 139 GSNGFGWNSIFQPNGHKHTYAEMTDEERNSC 169
>SPAC23G3.07c |snf30||SWI/SNF complex subunit
Snf30|Schizosaccharomyces pombe|chr 1|||Manual
Length = 274
Score = 22.2 bits (45), Expect = 9.4
Identities = 7/17 (41%), Positives = 13/17 (76%)
Frame = -2
Query: 215 LSVYRPRRLSAISPPLS 165
+S+ PR++ ++PPLS
Sbjct: 81 VSIASPRQMQVLTPPLS 97
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 22.2 bits (45), Expect = 9.4
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = -1
Query: 153 SATPCQNERKITDLTVKNFSTGSNGFSISLVAPRNRNKPYR 31
++ P + +T T STGS+GF+ +P N+ ++
Sbjct: 223 NSRPAPPVQDVTSSTKYGSSTGSSGFNTFNTSPHIFNQRHQ 263
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 909,985
Number of Sequences: 5004
Number of extensions: 14492
Number of successful extensions: 51
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 41344840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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