Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_H22
         (336 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.05 |||oligosaccharyltransferase epsilon subunit |Schizos...    80   1e-16
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      26   1.8  
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p...    25   4.1  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    24   5.4  
SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated |Schizosaccharom...    24   5.4  
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    23   9.4  

>SPAC6F6.05 |||oligosaccharyltransferase epsilon subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 122

 Score = 79.8 bits (188), Expect = 1e-16
 Identities = 43/105 (40%), Positives = 62/105 (59%), Gaps = 7/105 (6%)
 Frame = +2

Query: 2   HEAKTTKKLKIIDAYLLYVFLTAVIQFAYCCLVGTFPFNSFLSGFISTVSSFVLGVCLRL 181
           +   T   LK IDA+L ++ +   +QF Y  LVGT+PFNSFLSGFIS V  FV+ V  R+
Sbjct: 18  YNENTNLSLKTIDAFLGFLVVVGGLQFGYALLVGTYPFNSFLSGFISCVGQFVITVGFRM 77

Query: 182 QVNPE------NKTEFQGLSA-ERGFADFIFAHLVLHIVVINFIG 295
            +  +      +K +   +S  +R F +F F+ LVLH   +NF+G
Sbjct: 78  ALTQQELQSSSSKKKSPVVSPYKRAFLEFCFSSLVLHFFAVNFLG 122


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
 Frame = +1

Query: 82  RLLLPCRH---ISLQLFFEWFYFYCQFI--CSRSMPETSSEPGEQD*VP 213
           RL LP  H    +++ FF WF+F+  F   C R        P + + VP
Sbjct: 58  RLKLPYHHHHTFTIEAFFYWFFFFFFFFSHCRRFHIAIFIHPYDSNVVP 106


>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 752

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 261 KCANMKSAKPRSALNPWN 208
           K   +K  +P S LNPWN
Sbjct: 60  KYGAIKVVRPSSVLNPWN 77


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 12/36 (33%), Positives = 24/36 (66%)
 Frame = +2

Query: 179 LQVNPENKTEFQGLSAERGFADFIFAHLVLHIVVIN 286
           L++ PE+K E++GL +E   AD + ++L+  +  +N
Sbjct: 373 LRLLPEDKEEYEGLRSE---ADKLNSNLLFKLQTLN 405


>SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 116 NSFLSGFISTVSSFVLGVCLRLQVNPEN-KTEFQGLSAE 229
           +SFLSGFI ++      V +    NP+N KT+    SAE
Sbjct: 105 DSFLSGFIKSLLEIDSSVVIYNTENPDNPKTKQVMPSAE 143


>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
 Frame = +2

Query: 8   AKTTKKLKIIDAYLL-YVFLTAVIQF----AYCCLVGTFPFNSFL 127
           A T K++ +I  +L  Y  L    QF    A CCL   +P N+FL
Sbjct: 252 ASTEKQMDLIVKHLRPYTALLYFDQFGNYVAQCCLRFKYPKNTFL 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,153,074
Number of Sequences: 5004
Number of extensions: 20458
Number of successful extensions: 65
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)