Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_H22
         (336 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0783 + 19607871-19607951,19608027-19608074,19608719-196088...   114   2e-26
08_02_1257 - 25646029-25646054,25646139-25646236,25646609-256467...    26   6.6  
03_01_0524 + 3943581-3943610,3943889-3944050,3944403-3944637,394...    26   6.6  

>04_03_0783 +
           19607871-19607951,19608027-19608074,19608719-19608806,
           19608887-19608930,19609016-19609099
          Length = 114

 Score =  114 bits (274), Expect = 2e-26
 Identities = 53/96 (55%), Positives = 71/96 (73%)
 Frame = +2

Query: 8   AKTTKKLKIIDAYLLYVFLTAVIQFAYCCLVGTFPFNSFLSGFISTVSSFVLGVCLRLQV 187
           A T   LKIID Y+++   TA+IQ  Y  +VG+FPFNSFLSG +S + + VL VCLR+QV
Sbjct: 20  AATPTNLKIIDLYVVFAVATALIQVVYMGIVGSFPFNSFLSGVLSCIGTAVLAVCLRIQV 79

Query: 188 NPENKTEFQGLSAERGFADFIFAHLVLHIVVINFIG 295
           N +NK EF+ L  ER FADF+  +LVLH+V++NF+G
Sbjct: 80  NKDNK-EFKDLPPERAFADFVLCNLVLHLVIMNFLG 114


>08_02_1257 - 25646029-25646054,25646139-25646236,25646609-25646700,
            25646786-25646893,25647212-25647346,25647648-25647752,
            25647951-25648088,25648865-25648963,25649079-25649195,
            25649446-25649610,25649955-25650014,25650395-25650559,
            25650636-25650746,25651220-25651333,25651466-25651531,
            25651857-25651994,25652303-25652386,25652468-25652510,
            25652621-25652676,25652772-25652880,25652944-25653026,
            25653127-25653210,25653383-25653454,25653557-25653634,
            25653717-25653800,25653892-25653962,25654095-25654164,
            25654314-25654403,25654500-25654661,25654702-25654817,
            25654946-25654988,25655069-25655185,25655897-25656046
          Length = 1082

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 191  PENKTEFQGLSAERGFADFIFAHLVLHIVVINFIG 295
            PE +  F+G++    F   I    V  I++I F+G
Sbjct: 985  PEERNVFKGITKNHLFMGIIAITTVFQILIIEFLG 1019


>03_01_0524 +
           3943581-3943610,3943889-3944050,3944403-3944637,
           3945626-3945666,3946101-3946145,3947119-3947246,
           3947446-3947554,3947641-3947694
          Length = 267

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 22  KTEDNRCLPTLCVFN-RRNSVRLLLPCRHI 108
           KT   RC+  +C    RR ++++ LPC+H+
Sbjct: 209 KTRRERCV--ICQMEYRRGNLQMTLPCKHV 236


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,819,995
Number of Sequences: 37544
Number of extensions: 116455
Number of successful extensions: 281
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 280
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)