Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_H22
         (336 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin prot...    22   2.3  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              21   4.0  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   4.0  
M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    20   7.0  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    20   7.0  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    20   7.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   9.2  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    20   9.2  

>AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin
           protein.
          Length = 124

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -3

Query: 208 LSLVLRVHLKSQAYS*NK*TDSRNKTTQKRVEGKCADKATISELNYG 68
           L L++ + L     S N   D R  T  + ++GK  + A+++  N+G
Sbjct: 7   LLLMVSITLVIAEESDNVLFDKRAPTGHQEMQGKEKNSASLNSENFG 53


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 21.0 bits (42), Expect = 4.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 22 KTEDNRCLPTLCVFNRRN 75
          + ++ + LPT CVF R N
Sbjct: 29 RKKNKKPLPTECVFCRNN 46


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 4.0
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = +2

Query: 98  VGTFPFNSFLSGFISTVSSFVLGVCLRLQVNPENKTEFQGLSA 226
           V ++PF   ++   + + + V   C R+ +NP +K   Q +S+
Sbjct: 317 VPSYPFEEDINEGSNYMQTRVPAWCDRVLLNPTDKMLVQDISS 359


>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -2

Query: 89  NKRTELRRLKTHKVGKHRLSS 27
           N+R + +RL+  ++ K RLS+
Sbjct: 59  NRRAKAKRLQEAEIEKLRLSA 79


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 79  VRLLLPCRHISLQLFFEWFY 138
           V+LLL  +HIS Q+  E  Y
Sbjct: 34  VKLLLQVQHISKQISEEQRY 53


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 79  VRLLLPCRHISLQLFFEWFY 138
           V+LLL  +HIS Q+  E  Y
Sbjct: 34  VKLLLQVQHISKQISEEQRY 53


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +1

Query: 235 LCRFHICTFSPSYCC 279
           LCR+    F+  +CC
Sbjct: 736 LCRYEAHCFALCHCC 750


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = -2

Query: 131 HSKKS*REMCRQGNNKRTELRRLKTHKVGKHRLSS 27
           H +     +C   N +      L THK  +HR SS
Sbjct: 29  HEQSDTLYVCEFCNRRYRTKNSLTTHKSLQHRGSS 63


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,248
Number of Sequences: 438
Number of extensions: 1436
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7591023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)