Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_H21
         (541 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   6.1  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    21   8.1  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    21   8.1  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -3

Query: 221 PRGAGGIPVS 192
           PRG GG+P S
Sbjct: 399 PRGPGGVPTS 408


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = +1

Query: 286 EKSTNKENKITITNDKGRLSKEEIERMVNEAEKYRTEDDKQKD 414
           E+  N   KI    +   +    IE+  NE++KY T  +  ++
Sbjct: 166 EEIKNVLTKINKIKEHDTVLVVNIEKSENESKKYATSSNSLRN 208


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 16/73 (21%), Positives = 27/73 (36%)
 Frame = +1

Query: 286 EKSTNKENKITITNDKGRLSKEEIERMVNEAEKYRTEDDKQKDTIQSKNALESYCFNMKS 465
           E+  N   KI    +   +    IE+  NE++KY T  +  ++         S     +S
Sbjct: 177 EEIKNVLTKINKIEEHDTVLVVNIEKSGNESKKYATSSNSLRNRTHGFQHTSSRYSRERS 236

Query: 466 TMEDEKLKDKITD 504
              D   + K  D
Sbjct: 237 CSRDRNREYKKKD 249


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.312    0.131    0.360 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,228
Number of Sequences: 438
Number of extensions: 2502
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.4 bits)