Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_H20
         (473 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    32   0.039
SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces pombe...    28   0.83 
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1...    26   3.4  
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    25   4.5  
SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA synthase|Sc...    25   7.8  
SPCC965.08c |alr1||alanine racemase Alr1|Schizosaccharomyces pom...    25   7.8  
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch...    25   7.8  

>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 32.3 bits (70), Expect = 0.039
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +2

Query: 122 TTDVAGVRDEKNFPRPVRLTEPGKVRLGFIPEEWFQFFHS 241
           TTD+A V D+KN P P  +    K  L    E +F F  S
Sbjct: 760 TTDIAAVVDDKNIPSPSGVIPAYKSALNVAAETYFSFLAS 799


>SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 27.9 bits (59), Expect = 0.83
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 318 WNMSTTLVFHCSLWSFSP 371
           WN+ T  + + SLWSFSP
Sbjct: 35  WNLKTLQLVNPSLWSFSP 52


>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 239 SKTGVTGPYTFGVGLTTYLFSKEIYVMEHEYY 334
           +KT +  PY   VG  T LFS  IY++   Y+
Sbjct: 483 NKTTLNTPYANAVGNFTGLFSGLIYIVLISYF 514


>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -1

Query: 122 WSFWQ*VLCTGTVWPQLN 69
           WS W  +   GT WP ++
Sbjct: 573 WSLWNFITMLGTAWPAIS 590


>SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA
           synthase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 447

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +2

Query: 254 TGPYTFGVGLTTYLFSKEIYVMEHEYYTGLSLLVMVI 364
           TG YT G+GLT   F  +    E  Y  GL+ L  +I
Sbjct: 35  TGKYTIGLGLTKMAFVDD---REDIYSFGLTALSQLI 68


>SPCC965.08c |alr1||alanine racemase Alr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 375

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = +2

Query: 158 FPRPVRL---TEPGKVRLGFIPEEWFQFFHSKTGVTGPYTFGVGLTTYLFSKEIYVMEH 325
           F RPV +    + G  RLGF P ++ +F++  +        G  +T + F+  +   EH
Sbjct: 122 FNRPVEIWLKLDSGMNRLGFTPSQFMKFYNLLSNNKNVSNIG-KITHFAFADMLENPEH 179


>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -2

Query: 271 KCVGTSYTSL*VEELEPFFRNESESHFTRFSEPDWSWEVLLITYTSNICG 122
           K V TS  S  +  L+P + N+  S F+R+   D +   LL TY     G
Sbjct: 187 KYVSTSSKSPVMYILDPAYENDRHSDFSRY---DHALHDLLSTYIDEATG 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,096,645
Number of Sequences: 5004
Number of extensions: 42599
Number of successful extensions: 119
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)