Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_H20
         (473 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0599 + 25395606-25395705,25396465-25396544,25396901-253969...    34   0.067
02_01_0079 + 554635-556098                                             31   0.63 
07_01_1113 - 10292781-10293299                                         30   1.1  
01_05_0273 - 20283965-20284085,20284197-20284348,20284828-202850...    28   3.3  
11_06_0099 + 20070925-20073867                                         27   5.8  
03_02_0163 - 6056959-6058989                                           27   7.7  
02_01_0345 + 2484073-2485152                                           27   7.7  

>11_06_0599 +
           25395606-25395705,25396465-25396544,25396901-25396966,
           25397076-25397123,25397226-25397293,25397404-25397476,
           25397573-25397734,25398042-25398236,25398325-25398413,
           25398487-25398676
          Length = 356

 Score = 33.9 bits (74), Expect = 0.067
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = -2

Query: 238 VEELEPFFRNESESHFTRFSEPDWSWEVLL---ITYTSNICGGASGNKCCVRGLFGRS 74
           V  L P+F    E  +  FS   W  E ++   +T    IC G+  +  C R ++GRS
Sbjct: 243 VPHLPPYFCYLGEWTYHHFSREVWLHETIVGNVVTRNETICDGSGEDPTCSRSVYGRS 300


>02_01_0079 + 554635-556098
          Length = 487

 Score = 30.7 bits (66), Expect = 0.63
 Identities = 19/51 (37%), Positives = 26/51 (50%)
 Frame = -2

Query: 373 GGENDHNEQ*KTSVVLMFHDVYLLAE*VRREADAKCVGTSYTSL*VEELEP 221
           G  +  N+Q     V++     L+AE  RR  D +C GTS+T L   EL P
Sbjct: 436 GEPSPGNKQCAAKEVVVATACMLVAELFRRYDDFECDGTSFTKLDKRELTP 486


>07_01_1113 - 10292781-10293299
          Length = 172

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +2

Query: 155 NFPRPVRLTE-PGKVRLGFIPEEWFQFFHSKTGVTGPYTFGVGLT 286
           N PR  R T  PG +RL  + +   +  H +    GP+  G+GL+
Sbjct: 100 NPPRSARTTSAPGSLRLPEVAQRVVELLHHRHWWFGPWALGLGLS 144


>01_05_0273 -
           20283965-20284085,20284197-20284348,20284828-20285001,
           20285082-20285331,20285782-20285898,20286412-20286474,
           20286568-20286740
          Length = 349

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = -3

Query: 192 LPGSVSLTGLGKFFSSRTPATSVVELLAISAVY 94
           + GSV++ GLG  +SS T ++++  LL + A +
Sbjct: 80  IAGSVNIYGLGLSYSSATSSSAISNLLPVLAFF 112


>11_06_0099 + 20070925-20073867
          Length = 980

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 365 FATKKFGPQLSAWLDKEVDAVESSWNE 445
           FA+   GP  S WL  +VD V  + N+
Sbjct: 470 FASITMGPSFSRWLQSQVDIVALAMND 496


>03_02_0163 - 6056959-6058989
          Length = 676

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = -2

Query: 238 VEELEPFFRNESESHFTRFSEPDWSWEVLLITY--TSNICG 122
           VEE E  FR+   S  +R     WS+  ++  Y  T N+ G
Sbjct: 375 VEEAEEIFRDMKASMDSRSKPDSWSYSSMVTLYSCTGNVAG 415


>02_01_0345 + 2484073-2485152
          Length = 359

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -1

Query: 473 LDLSRTAHGPRSSLTLLHQLPCPTTRTAVAQTSWWRK*P 357
           +DL R A   RS   L+H+ P P     +    +WR  P
Sbjct: 130 VDLGRDARPGRSFEALIHREPRPVDGDRIEDECYWRPLP 168


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,090,971
Number of Sequences: 37544
Number of extensions: 294117
Number of successful extensions: 852
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)