Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_H19
(368 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 33 0.019
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy... 31 0.043
SPAC26F1.05 |mug106||sequence orphan|Schizosaccharomyces pombe|c... 29 0.23
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa... 28 0.40
SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces po... 28 0.53
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 27 0.93
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 27 0.93
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 27 1.2
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 26 1.6
SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch... 26 2.1
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 24 8.6
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz... 24 8.6
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 32.7 bits (71), Expect = 0.019
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Frame = -3
Query: 177 KWYKC---SVFFNSPFSSINLSGLTSRGSSHNFGSKFISPTDINTVVS 43
KWY SV++N+ S++ S T R +S+ S+F+S D N+ +S
Sbjct: 3860 KWYNSTTQSVYYNATSSTVPWSNSTFRNTSNTMTSRFVS-NDFNSTIS 3906
>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 541
Score = 31.5 bits (68), Expect = 0.043
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +2
Query: 29 YFLPKDTTVLISVGDINLDPKLWEDPLEVKPERFIDENGLLKNT-EHLYHFGMGYRRCLG 205
Y +PKD V+ ++ D K++ +P P+R+ NGL + + ++ FG G CLG
Sbjct: 403 YTVPKDAMVIPTLYGALHDSKVYPEPETFNPDRWAP-NGLAEQSPKNWMVFGNGPHVCLG 461
Query: 206 DSLA 217
A
Sbjct: 462 QRYA 465
>SPAC26F1.05 |mug106||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 115
Score = 29.1 bits (62), Expect = 0.23
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 271 LLQWSFTVLRTRHRFDCHPETFYC 342
LL++ + VL H+FDC T YC
Sbjct: 25 LLRYRYMVLAYNHKFDCIVVTIYC 48
>SPAC1783.07c |pap1|caf3, caf3|transcription factor
Caf3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 552
Score = 28.3 bits (60), Expect = 0.40
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +2
Query: 11 DTEIDGYFLPKDTTVLISVGDINLDPKL---WEDPLEVKPERFIDENGLLKNTEHLY 172
DT +D F P + ++ ++P+L W +P E + F ++ G + + H Y
Sbjct: 361 DTGLDSLFEPDSAIENSHLKNVVMEPELFQAWREPAESLDKEFFNDEGEIDDVFHNY 417
>SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 508
Score = 27.9 bits (59), Expect = 0.53
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = +2
Query: 17 EIDGYFLPKDTTVLISVGDINLDPKLWEDPLE 112
EIDG LP D IS GD +D W LE
Sbjct: 75 EIDGAILPPDLIKTISTGD--MDHPSWNSALE 104
>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 984
Score = 27.1 bits (57), Expect = 0.93
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -3
Query: 309 MSGSEDGKTPLQQFTLNFCMIPTNVINMNDFAKES 205
+SGSED K L +F N +IP N + ++ +S
Sbjct: 668 LSGSEDTKVTLLEFQSNGNIIPLNSVKFHNSGIQS 702
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 27.1 bits (57), Expect = 0.93
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = -3
Query: 171 YKCSVFFNSPFSSINLSGLTS-RGSSHNFGSKFISPTDINTVVSFGRKYPSISVSSS 4
Y+ +S SSI + T GSS G K I+PT ++ S +K PS ++ +S
Sbjct: 367 YETETITSSEISSIIYNFSTPISGSSFPDGFKPINPTSFPSLTSSTKKIPSTTLPTS 423
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 26.6 bits (56), Expect = 1.2
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -3
Query: 138 SSINLSGLTSRGSSHN-FGSKFISPTDINTVVSFGRKYPSISVSS 7
SS N + GS+H+ + K SPT ++T S R YP ++ S
Sbjct: 485 SSGNTRKTSLLGSNHSSYSDKLGSPTILSTSFSLARPYPEPALVS 529
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 26.2 bits (55), Expect = 1.6
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +2
Query: 29 YFLPKDTTVLISVGDINLDPKLWEDPLEVKPERFIDENGLLKNTEH 166
Y + T +IS+ NLD K LE FID G+ EH
Sbjct: 1175 YQIQDQETEIISLNADNLDLKDTNGVLEKNASDFIDFQGIKSRYEH 1220
>SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate
dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 25.8 bits (54), Expect = 2.1
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Frame = -3
Query: 168 KCS--VFFNSPFSSINLSGLTSRGSSHNFGSKFISPTDINTVVSFGRK--YPS 22
KC+ V PF SG + S S+F+SP I ++ YPS
Sbjct: 494 KCTGAVVGEQPFGGARASGTNDKAGSGMILSRFVSPRSIKDTFAYADSVLYPS 546
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 23.8 bits (49), Expect = 8.6
Identities = 14/53 (26%), Positives = 22/53 (41%)
Frame = -3
Query: 354 RIKSAVKGFGVAIKPMSGSEDGKTPLQQFTLNFCMIPTNVINMNDFAKESPRQ 196
++K + F + +KP D K LQ +F P +N SPR+
Sbjct: 402 KLKKHLSSFQIYLKPKDYLLDPKPLLQLICASFFGFPVGFVNAVTRHIPSPRE 454
>SPCC1795.08c |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 985
Score = 23.8 bits (49), Expect = 8.6
Identities = 10/39 (25%), Positives = 20/39 (51%)
Frame = +2
Query: 8 EDTEIDGYFLPKDTTVLISVGDINLDPKLWEDPLEVKPE 124
++ ++DG + D L SVG ++ P +++PE
Sbjct: 671 DENQLDGNKIKDDNQKLSSVGTFSVRPPYPPSSKDIRPE 709
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,574,106
Number of Sequences: 5004
Number of extensions: 32064
Number of successful extensions: 95
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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