Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_H18
(365 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c... 66 2e-12
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 50 9e-08
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 31 0.074
SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S... 30 0.098
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1... 30 0.098
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual 30 0.13
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar... 30 0.13
SPAC806.02c |||Par A family ATPase iron cluster assembly protein... 29 0.17
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po... 29 0.17
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 29 0.17
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy... 29 0.23
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 29 0.30
SPBC713.05 |||WD repeat protein, human MAPK organizer 1 |Schizos... 29 0.30
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc... 29 0.30
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 28 0.39
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb... 28 0.39
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo... 28 0.39
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 28 0.39
SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom... 28 0.52
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 27 0.69
SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch... 27 0.91
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom... 27 0.91
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi... 27 1.2
SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p... 26 1.6
SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces ... 26 2.1
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 26 2.1
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc... 26 2.1
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz... 26 2.1
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 25 2.8
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 25 3.7
SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyce... 25 3.7
SPAC23H4.06 |gln1||glutamate-ammonia ligase Gln1|Schizosaccharom... 25 3.7
SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit S5|S... 25 4.9
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm... 25 4.9
SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3 |Schizosacchar... 25 4.9
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 25 4.9
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 25 4.9
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M... 25 4.9
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 25 4.9
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 24 6.4
SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc... 24 6.4
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 24 8.5
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||... 24 8.5
SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po... 24 8.5
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc... 24 8.5
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 24 8.5
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 24 8.5
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce... 24 8.5
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 24 8.5
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p... 24 8.5
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr... 24 8.5
>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 66.1 bits (154), Expect = 2e-12
Identities = 28/53 (52%), Positives = 39/53 (73%), Gaps = 1/53 (1%)
Frame = +1
Query: 73 AQTIFADHKDLIHDVAYDFYGERMATCSSDQYVKVWD-SDGHGGWRLTTSWKA 228
A TI +H+DL++DV YDFYG RM +CS+DQ VKV+D +D W +T+ W+A
Sbjct: 6 ATTIQTNHQDLVNDVTYDFYGRRMVSCSADQRVKVYDFNDDTETWAITSEWRA 58
Score = 46.0 bits (104), Expect = 2e-06
Identities = 18/30 (60%), Positives = 22/30 (73%)
Frame = +2
Query: 239 SVWKVTWAHPEFGQVIATCSFDRTAAIWEE 328
S+ +V WAHP FGQV+A CS DR I+EE
Sbjct: 62 SLMRVAWAHPSFGQVLAVCSLDRGVRIYEE 91
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 50.4 bits (115), Expect = 9e-08
Identities = 19/39 (48%), Positives = 28/39 (71%)
Frame = +1
Query: 79 TIFADHKDLIHDVAYDFYGERMATCSSDQYVKVWDSDGH 195
T+ H D+IHD D+YG+R+ATCSSDQ +KV+ + +
Sbjct: 3 TVDTQHDDMIHDAILDYYGKRLATCSSDQTIKVFSIENN 41
Score = 48.0 bits (109), Expect = 5e-07
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +2
Query: 233 SGSVWKVTWAHPEFGQVIATCSFDRTAAIWEEVG 334
SG VW++ WAHP+FG ++A+ S+D +W E G
Sbjct: 53 SGPVWQLGWAHPKFGTILASASYDGHVIVWRETG 86
Score = 27.9 bits (59), Expect = 0.52
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Frame = +1
Query: 88 ADHKDLIHDVAY----DFYGERMATCSSDQYVKVWDSDGHGGWRLT 213
A H D DVA+ +A+ S D+ V +W +G G W+ T
Sbjct: 202 AGHVDWTRDVAWAPSVGLTKTYLASASQDKNVFIWTKEGDGPWQKT 247
Score = 24.6 bits (51), Expect = 4.9
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +2
Query: 227 HTS--GSVWKVTWAHPEFGQVIATCSFDRTAAIWE 325
HT+ SV V+WA E+G ++A S D ++ E
Sbjct: 95 HTAHQASVNAVSWAPHEYGALLACASSDGKVSVLE 129
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 30.7 bits (66), Expect = 0.074
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +1
Query: 37 AMGELTATNLFEAQTIFADHKDLIHDVAYDFYGERMATCSSDQYVKVWDSD 189
A L + + A + H + DVA+ +G AT S DQ ++W D
Sbjct: 401 ASARLWSVDTKTALVAYKGHTGPVWDVAFGPFGHYFATASHDQTAQLWSCD 451
Score = 29.5 bits (63), Expect = 0.17
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +2
Query: 227 HTSGSVWKVTWAHPEFGQVIATCSFDRTAAIW 322
HT G VW V + FG AT S D+TA +W
Sbjct: 420 HT-GPVWDVAFG--PFGHYFATASHDQTAQLW 448
>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
Sop2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 377
Score = 30.3 bits (65), Expect = 0.098
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +1
Query: 85 FADHKDLIHDVAYDFYGERMATCSSDQYVKVWDSDGHGGWRLT 213
F+DH ++ V + R+ TCS D+ V++ G W+ T
Sbjct: 51 FSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQT 93
>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
Prw1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 431
Score = 30.3 bits (65), Expect = 0.098
Identities = 14/38 (36%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Frame = +1
Query: 73 AQTIFADHKDLIHDVAYDFYGER-MATCSSDQYVKVWD 183
A+++ A H IH VA++ + + +ATCS+D+ + +WD
Sbjct: 274 ARSVHA-HSGPIHSVAFNPHNDFILATCSTDKTIALWD 310
Score = 28.7 bits (61), Expect = 0.30
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 233 SGSVWKVTWAHPEFGQVIATCSFDRTAAIWE 325
SG + V + +P ++ATCS D+T A+W+
Sbjct: 281 SGPIHSVAF-NPHNDFILATCSTDKTIALWD 310
>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 29.9 bits (64), Expect = 0.13
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 61 NLFEAQTIFADHKDLIHDVAYDFYGERMATCSSDQYVKVWDS 186
N+ E A + + I VA+ RMAT S D+ +++WDS
Sbjct: 50 NINEKHREAAAYGEAIRQVAFSKDYSRMATVSEDKCLRLWDS 91
>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 524
Score = 29.9 bits (64), Expect = 0.13
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 70 EAQTIFADHKDLIHDVAYDFYGERMATCSSDQYVKVWDSD 189
E Q + H+D + +A M +CS+D+ +KVW D
Sbjct: 241 EPQHCWKHHRDAVMGLAMRRGTNEMFSCSADRSIKVWSLD 280
>SPAC806.02c |||Par A family ATPase iron cluster assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 608
Score = 29.5 bits (63), Expect = 0.17
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +1
Query: 67 FEAQTIFADHKDLIHDVAYDFYGERMATCSSDQYVKVWDS 186
+E H++ + +A+ G +ATCS D+ V +W++
Sbjct: 368 WECTAALEGHENEVKCIAWSCNGNYLATCSRDKSVWIWEA 407
Score = 26.2 bits (55), Expect = 1.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 275 GQVIATCSFDRTAAIWEEVGD 337
G +ATCS D++ IWE D
Sbjct: 390 GNYLATCSRDKSVWIWEATED 410
>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 29.5 bits (63), Expect = 0.17
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +2
Query: 227 HTSGSVWKVTWAHPEFGQVIATCSFDRTAAIWE 325
HTS V+ +T+ H + Q+IA+C DRT IW+
Sbjct: 214 HTS-FVYSLTYIHNQ--QLIASCGEDRTIRIWK 243
Score = 27.1 bits (57), Expect = 0.91
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +1
Query: 145 ATCSSDQYVKVWDSDG 192
A+CS+D +K+W SDG
Sbjct: 190 ASCSNDGVIKLWTSDG 205
Score = 24.6 bits (51), Expect = 4.9
Identities = 6/29 (20%), Positives = 16/29 (55%)
Frame = +1
Query: 94 HKDLIHDVAYDFYGERMATCSSDQYVKVW 180
H ++ + Y + +A+C D+ +++W
Sbjct: 214 HTSFVYSLTYIHNQQLIASCGEDRTIRIW 242
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 29.5 bits (63), Expect = 0.17
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +2
Query: 224 KHTSGSVWKVTWAHPEFGQVIATCSFDRTAAIWE 325
K S +W +WA E G AT S D+ W+
Sbjct: 621 KAHSRIIWDASWAPKEMGYFFATASRDKFVKFWK 654
Score = 27.9 bits (59), Expect = 0.52
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 34 FAMGELTATNLFEAQTIFADHKDLIHDVAYDFYGERMATCSSDQYVKVWDSDGHGG-WRL 210
F +G++ +F+A + H+D + V + E + + S+D + VW+ D + G W +
Sbjct: 249 FTLGKIDLKIVFDA--LLMGHEDWVMSVDWHPTKEMILSSSADSSMIVWEPDTNTGIWVV 306
Query: 211 T 213
T
Sbjct: 307 T 307
>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 314
Score = 29.1 bits (62), Expect = 0.23
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 85 FADHKDLIHDVAYDFYGERMATCSSDQYVKVWD 183
F H + + +A+ G+ +AT S D VKVWD
Sbjct: 79 FEGHTNNVTAIAFHCDGKWLATSSEDGTVKVWD 111
Score = 26.2 bits (55), Expect = 1.6
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 136 ERMATCSSDQYVKVWDSDGHGGWRLTTSWKAHQRF 240
+ +ATCS+D V +W ++ + L + HQR+
Sbjct: 228 KHLATCSADATVNIWSTEDM-SFMLERRLQGHQRW 261
>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 922
Score = 28.7 bits (61), Expect = 0.30
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +1
Query: 112 DVAYDFYGERMATCSSDQYVKVWDSD 189
D++YD + + TCS+D+ VK+W D
Sbjct: 583 DISYD--SKLLVTCSADKNVKIWGLD 606
Score = 28.7 bits (61), Expect = 0.30
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 76 QTIFADHKDLIHDVAYDFYGERMATCSSDQYVKVWD 183
++IFA H+D I +V + TCS D+ V+ WD
Sbjct: 612 KSIFA-HQDSIMEVTFQPDTYNFFTCSKDREVRYWD 646
Score = 26.6 bits (56), Expect = 1.2
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 94 HKDLIHDVAYDFYGERMATCSSDQYVKVWD 183
HK + + +D G R+A+ S D + VWD
Sbjct: 103 HKSAVTTMDFDKMGTRLASGSMDTDIIVWD 132
>SPBC713.05 |||WD repeat protein, human MAPK organizer 1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 28.7 bits (61), Expect = 0.30
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 94 HKDLIHDVAYDFYGERMATCSSDQYVKVWD 183
H+ L D+ YD + A+C D++++VWD
Sbjct: 57 HEILDLDLVYD--STKFASCGGDKFIQVWD 84
>SPAC31A2.14 |||WD repeat protein, human WRDR48
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 28.7 bits (61), Expect = 0.30
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 94 HKDLIHDVAYDFYGERMATCSSDQYVKVW 180
H ++D+A E + +CSSD VK+W
Sbjct: 78 HSAWVNDIALTHDSEGVISCSSDSTVKLW 106
Score = 26.6 bits (56), Expect = 1.2
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +1
Query: 79 TIFADHKDLIHDVAYDFYGERMATCSSDQYVKVW 180
T H D + D+ G + T SSD +K+W
Sbjct: 210 TDLVGHTDNVRDILISDDGRTILTASSDATIKLW 243
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 28.3 bits (60), Expect = 0.39
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 88 ADHKDLIHDVAYDFYGERMATCSSDQYVKVWDS 186
A H ++ V Y G +A+C D+ +++WDS
Sbjct: 218 AAHNGVVLCVNYSPNGVFLASCGRDKTIRIWDS 250
>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 494
Score = 28.3 bits (60), Expect = 0.39
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 9/52 (17%)
Frame = +1
Query: 154 SSDQYVKVWDSD---------GHGGWRLTTSWKAHQRFCLESHMGTPRVWSS 282
S D+ VKVWD GH + T SW + R + GT R+W +
Sbjct: 143 SDDKTVKVWDLSTGAVQYDLSGHEDYVRTASWMSATRLVSGGYDGTIRLWDT 194
>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 651
Score = 28.3 bits (60), Expect = 0.39
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 85 FADHKDLIHDVAYDFYGERMATCSSDQYVKVWDSDG 192
F H + I + + +AT S+D+ VKVWD G
Sbjct: 328 FQAHSEYITSLDFSHPFGTLATASTDKTVKVWDMAG 363
Score = 26.6 bits (56), Expect = 1.2
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +2
Query: 242 VWKVTWAHPEFGQVIATCSFDRTAAIWEEVGDTTASGSEKG 364
+ + ++HP FG +AT S D+T +W+ G GS KG
Sbjct: 335 ITSLDFSHP-FG-TLATASTDKTVKVWDMAG-VVYLGSLKG 372
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 28.3 bits (60), Expect = 0.39
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 94 HKDLIHDVAYDFYGERMATCSSDQYVKVWD 183
H D + + Y G+R+ T + D +KVWD
Sbjct: 338 HYDALSTLQYSSDGQRIITGADDGKIKVWD 367
>SPAC890.04c |||ribosome biogenesis protein Ytm1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 440
Score = 27.9 bits (59), Expect = 0.52
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 76 QTIFADHKDLIHDVAYDFYGERMATCSSDQYVKVWD 183
QT+F HKD++ V + S+D V +WD
Sbjct: 190 QTLFVGHKDIVERVRSLESSSVFISASADNTVGIWD 225
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 27.5 bits (58), Expect = 0.69
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +1
Query: 37 AMGELTATNLFEAQTIFADHKDLIHDVAYDFYGERMATCSSDQYVKVWD 183
A+G + ++ + +H I +A+ G ++AT S+D VK+WD
Sbjct: 329 AIGRIWDLRSGKSIMVLDEHIRQIVAMAWSPNGYQLATSSADDTVKIWD 377
>SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate
dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 27.1 bits (57), Expect = 0.91
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 242 VWKVTWAHPEFGQVIATCSFDRTAAIWEEVGDTTASG 352
V KV + HPEF + T S ++W +G+ A+G
Sbjct: 251 VSKVCFNHPEFAGLHFTGSTAVFRSLWGTIGENVANG 287
>SPAC25H1.08c |||ribosome biogenesis protein
Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 399
Score = 27.1 bits (57), Expect = 0.91
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 94 HKDLIHDVAYDFYGERMATCSSDQYVKVWDS 186
HKD I + + F G +AT D V++W S
Sbjct: 103 HKDSIVAIDWSFDGTYIATGGMDSQVRLWKS 133
>SPBC15D4.14 |taf73||TATA-binding protein associated factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 26.6 bits (56), Expect = 1.2
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 242 VWKVTWAHPEFGQVIATCSFDRTAAIWE 325
+W V ++ FG AT S D+TA +W+
Sbjct: 448 IWDVQFS--PFGYYFATASHDQTARLWD 473
Score = 24.6 bits (51), Expect = 4.9
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +1
Query: 82 IFADHKDLIHDVAYDFYGERMATCSSDQYVKVWD 183
+F H++ + V++ +AT SSD ++WD
Sbjct: 482 VFVGHQNDVDCVSFHPNAAYLATGSSDHTTRMWD 515
>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 301
Score = 26.2 bits (55), Expect = 1.6
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 122 TTSTEKGWPLVRATSMSRYGIP 187
T TE+ W L+ + S ++YGIP
Sbjct: 110 TAFTEELWSLIISASQNQYGIP 131
>SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 285
Score = 25.8 bits (54), Expect = 2.1
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +1
Query: 205 RLTTSWKAHQRFCLESHMGTPRVWSSHCNLF 297
+L WK HQRF + +WS N F
Sbjct: 2 KLKLRWKGHQRFLTRQNSLVGFIWSPLKNTF 32
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 25.8 bits (54), Expect = 2.1
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +1
Query: 67 FEAQTIFADHKDLIHDVAYDFYGERMATCSSDQYVKVW 180
F+ + H + +A+D G+ +A+ S D +KVW
Sbjct: 174 FKLIKVIEGHHTFVGGLAFDPMGQFLASQSFDHTLKVW 211
Score = 23.8 bits (49), Expect = 8.5
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 260 AHPEFGQVIATCSFDRTAAIWE 325
A GQ +A+ SFD T +W+
Sbjct: 191 AFDPMGQFLASQSFDHTLKVWK 212
>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 25.8 bits (54), Expect = 2.1
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +2
Query: 239 SVWKVTWAHPEFGQVIATCSFDRTAAIWE 325
S+ TW QVI++CS + +W+
Sbjct: 289 SITSATWLPQSTSQVISSCSANSALKLWD 317
Score = 24.6 bits (51), Expect = 4.9
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +1
Query: 118 AYDFYGE-RMATCSSDQYVKVWDSDGHG 198
A D+ E ++A+ S D V+VW+S HG
Sbjct: 442 AVDWSSEGQLASISDDGSVRVWNSSLHG 469
>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 25.8 bits (54), Expect = 2.1
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -3
Query: 273 NSGCAHVTFQTEPLVCFPTSC*SPSSMAIGIPYLD 169
NSG AH TE + +SC + A PY++
Sbjct: 501 NSGIAHHNLTTECIYLTKSSCLKIGNYAFSSPYIE 535
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 25.4 bits (53), Expect = 2.8
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +1
Query: 49 LTATNLFEA-QTIFADHKDLIHDVAYDFYGERMATCSSDQYVKVWD-SDGH 195
L AT+ EA + H ++ V Y + T SSD+ ++ WD + GH
Sbjct: 330 LDATSPAEACMHVLRGHLASVNSVQYSSKTGLIVTASSDRTLRTWDITTGH 380
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 25.0 bits (52), Expect = 3.7
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +1
Query: 94 HKDLIHDVAYDFYGERMATCSSDQYVKVW 180
H+D + V + G+R+A+ +D+ V++W
Sbjct: 472 HEDQVFAVDWSPDGQRVASGGADKAVRIW 500
Score = 23.8 bits (49), Expect = 8.5
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +2
Query: 275 GQVIATCSFDRTAAIWE 325
G+ IAT SFD + +W+
Sbjct: 401 GRCIATASFDSSVRLWD 417
>SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 473
Score = 25.0 bits (52), Expect = 3.7
Identities = 8/34 (23%), Positives = 18/34 (52%)
Frame = +1
Query: 82 IFADHKDLIHDVAYDFYGERMATCSSDQYVKVWD 183
+ + HK + +A + ++ T S D +++WD
Sbjct: 284 VLSGHKSTVASLAVQEFDPQVVTGSMDSTIRLWD 317
>SPAC23H4.06 |gln1||glutamate-ammonia ligase
Gln1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 359
Score = 25.0 bits (52), Expect = 3.7
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 197 EDGD*QLVGKHTSGSVWKVTWAHPEFG 277
+D D +L G+H +GS+ K T+ + G
Sbjct: 291 DDNDLRLTGRHETGSIDKFTYGVADRG 317
>SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit
S5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 24.6 bits (51), Expect = 4.9
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +2
Query: 32 FLQWGNLRQPTYLR 73
FLQ G+ RQPTY R
Sbjct: 8 FLQIGSRRQPTYFR 21
>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
intermediate chain Dic1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 544
Score = 24.6 bits (51), Expect = 4.9
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +1
Query: 82 IFADHKDLIHDVAY--DFYGERMATCSSDQYVKVWDSD 189
I H + + D+ Y + + TCS+D V +W+ D
Sbjct: 286 ISGGHLEPVTDITYINNPPSNNIVTCSTDGLVHIWEPD 323
>SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 24.6 bits (51), Expect = 4.9
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +2
Query: 224 KHTSGSVWKVTWAHPEFGQVIATCSFDRTAAIWEEVGD 337
K TSG W + +FG ++++C+ A + EV +
Sbjct: 522 KKTSGLEWNIEDRICQFGGLVSSCNVVTKATVTIEVNN 559
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 24.6 bits (51), Expect = 4.9
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 11/59 (18%)
Frame = +1
Query: 139 RMATCSSDQYVKVWDSD---------GH--GGWRLTTSWKAHQRFCLESHMGTPRVWSS 282
R+ +CS D +K WD + GH G W + H R +H G +VW +
Sbjct: 446 RLFSCSLDGTIKQWDIEKKKCVHTLFGHIEGVWEIAAD---HLRLISGAHDGVVKVWEA 501
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 24.6 bits (51), Expect = 4.9
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 227 HTSGSVWKVTWAHPEFGQVIATCSFDRTAAIWE 325
HT +V + W H + V+ATCS D + W+
Sbjct: 321 HTR-AVTDMNW-HRQNPDVLATCSIDSSVHCWD 351
>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 556
Score = 24.6 bits (51), Expect = 4.9
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 263 HPEFGQVIATCSFDRTAAIWE 325
HP F ++ TC FDRT I++
Sbjct: 226 HPYF-PLLLTCGFDRTLRIYQ 245
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 24.6 bits (51), Expect = 4.9
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +1
Query: 94 HKDLIHDVAYDFYGERMATCSSDQYVKVWD 183
H+ + DVA+ + T S D +KVW+
Sbjct: 163 HEMEVRDVAFSPNDSKFVTASDDGSLKVWN 192
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 24.2 bits (50), Expect = 6.4
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -2
Query: 283 DLTKLWVCPCDFPNRT 236
DL +LWV CD N T
Sbjct: 655 DLLRLWVASCDSTNDT 670
>SPBC17D11.08 |||WD repeat protein, human WDR68
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 435
Score = 24.2 bits (50), Expect = 6.4
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1
Query: 139 RMATCSSDQYVKVWDSD 189
++ATC D V +WD D
Sbjct: 330 KLATCGDDCVVSLWDLD 346
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 23.8 bits (49), Expect = 8.5
Identities = 8/23 (34%), Positives = 11/23 (47%)
Frame = +2
Query: 257 WAHPEFGQVIATCSFDRTAAIWE 325
W G + T S DRT +W+
Sbjct: 450 WTFEYVGDTLVTGSTDRTVRVWD 472
>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 23.8 bits (49), Expect = 8.5
Identities = 7/32 (21%), Positives = 18/32 (56%)
Frame = +1
Query: 94 HKDLIHDVAYDFYGERMATCSSDQYVKVWDSD 189
H ++ +A+ +A+C +D ++VW+ +
Sbjct: 245 HYGTVNGLAWTSDARYLASCGTDDRIRVWNME 276
>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 23.8 bits (49), Expect = 8.5
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 205 RLTTSWKAHQRFCLESHM 258
RL TS+ H+R + SHM
Sbjct: 133 RLVTSFNYHERIVVNSHM 150
>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 23.8 bits (49), Expect = 8.5
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +1
Query: 82 IFADHKDLIHDVAYDFYGERMATCSSDQYVKVWD 183
+ HKD+I +A G + + S D V+++D
Sbjct: 214 VLKGHKDIITSLAISKDGSSLLSNSMDNTVRIFD 247
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 23.8 bits (49), Expect = 8.5
Identities = 8/30 (26%), Positives = 18/30 (60%)
Frame = +1
Query: 94 HKDLIHDVAYDFYGERMATCSSDQYVKVWD 183
HK+ ++ +A+ + + S D+ +KVW+
Sbjct: 483 HKESVYSIAFSPDSSILLSGSLDKTIKVWE 512
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 23.8 bits (49), Expect = 8.5
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Frame = +2
Query: 23 YILFLQWGNLRQPTYL-RLKPYSLITKILSTM---LHTTSTEKGW 145
Y LF++W R+ ++L + + +LS M L +T+K W
Sbjct: 153 YSLFIEWNRTRKHSFLDNSRDEGFLNLLLSLMFFFLTLNNTDKTW 197
>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 715
Score = 23.8 bits (49), Expect = 8.5
Identities = 9/36 (25%), Positives = 17/36 (47%)
Frame = -2
Query: 343 CSITNFLPDGSCTVKRTSCNDLTKLWVCPCDFPNRT 236
C ++ +C+ K + L ++C CD N+T
Sbjct: 664 CKAFSYFSQVACSCKSITVCPLHIEYLCKCDLSNKT 699
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 23.8 bits (49), Expect = 8.5
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +1
Query: 124 DFYGERMATCSSDQYVKVW 180
D +GE + C+S ++V VW
Sbjct: 122 DAFGEWIIACTSSRHVYVW 140
>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 832
Score = 23.8 bits (49), Expect = 8.5
Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Frame = -1
Query: 329 LPPRWQLYGQKNK---LQ*LDQTLGVPM*LSKQNRWCAFQLVVSLHPPWPSESHTLTY 165
L W+ G+ K L L L + S N Q + PW SE+HTL +
Sbjct: 571 LTAEWETEGEDRKTMTLPSLSDKLVYSILQSNPNTVVVTQSGTPIEMPWISEAHTLLH 628
>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 23.8 bits (49), Expect = 8.5
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +3
Query: 12 DNLNISFFCNGGTY 53
DN +FFC GTY
Sbjct: 659 DNCEANFFCKDGTY 672
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,751,124
Number of Sequences: 5004
Number of extensions: 37047
Number of successful extensions: 194
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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