Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_H18
(365 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL021481-1|CAA16333.1| 363|Caenorhabditis elegans Hypothetical ... 64 2e-11
AC024214-18|AAF36083.1| 211|Caenorhabditis elegans Nuclear pore... 50 4e-07
AC024214-17|AAF36082.1| 313|Caenorhabditis elegans Nuclear pore... 50 4e-07
Z81113-5|CAB03282.3| 404|Caenorhabditis elegans Hypothetical pr... 39 0.001
AF164430-1|AAF82632.1| 404|Caenorhabditis elegans LIS-1 protein. 39 0.001
AF039711-10|AAB96707.2| 567|Caenorhabditis elegans Yeast prp (s... 38 0.003
U53340-3|AAA96208.1| 578|Caenorhabditis elegans Hypothetical pr... 36 0.012
AL034393-7|CAA22322.2| 337|Caenorhabditis elegans Hypothetical ... 33 0.083
Z82266-11|CAB05177.4| 1192|Caenorhabditis elegans Hypothetical p... 32 0.11
Z73978-3|CAA98293.1| 501|Caenorhabditis elegans Hypothetical pr... 32 0.11
DQ360810-1|ABC88647.1| 1192|Caenorhabditis elegans intraflagella... 32 0.11
Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical pr... 31 0.19
AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical ... 31 0.19
AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein. 31 0.19
Z71181-10|CAA94901.2| 678|Caenorhabditis elegans Hypothetical p... 30 0.44
Z71177-11|CAA94873.2| 678|Caenorhabditis elegans Hypothetical p... 30 0.44
Z81490-1|CAB04014.1| 510|Caenorhabditis elegans Hypothetical pr... 30 0.58
AF330595-1|AAK00353.1| 510|Caenorhabditis elegans SMU-1 protein. 30 0.58
AF016431-1|AAC24248.2| 311|Caenorhabditis elegans Hypothetical ... 30 0.58
AL032627-14|CAA21549.1| 386|Caenorhabditis elegans Hypothetical... 29 0.77
Z80215-3|CAB02270.1| 496|Caenorhabditis elegans Hypothetical pr... 29 1.3
Z78544-3|CAB01760.1| 395|Caenorhabditis elegans Hypothetical pr... 28 1.8
Z68342-4|CAA92776.1| 1000|Caenorhabditis elegans Hypothetical pr... 28 1.8
Z99278-1|CAB16490.1| 793|Caenorhabditis elegans Hypothetical pr... 28 2.4
Z83016-1|CAB05407.1| 451|Caenorhabditis elegans Hypothetical pr... 28 2.4
Z68315-3|CAA92670.1| 430|Caenorhabditis elegans Hypothetical pr... 28 2.4
Z68314-8|CAA92666.1| 451|Caenorhabditis elegans Hypothetical pr... 28 2.4
Z54281-9|CAA91052.1| 451|Caenorhabditis elegans Hypothetical pr... 28 2.4
AL132904-13|CAC35846.4| 778|Caenorhabditis elegans Hypothetical... 28 2.4
Z92813-7|CAB07283.2| 758|Caenorhabditis elegans Hypothetical pr... 27 4.1
Z81099-1|CAB03187.1| 600|Caenorhabditis elegans Hypothetical pr... 27 4.1
AL110500-12|CAB60432.1| 362|Caenorhabditis elegans Hypothetical... 27 4.1
AF047651-2|AAL13318.1| 486|Caenorhabditis elegans Hypothetical ... 27 4.1
AF047651-1|AAK67207.1| 484|Caenorhabditis elegans Hypothetical ... 27 4.1
U41278-1|AAK31511.1| 305|Caenorhabditis elegans Hypothetical pr... 27 5.4
Z70684-1|CAA94597.1| 580|Caenorhabditis elegans Hypothetical pr... 26 7.2
Z46242-3|CAA86338.2| 680|Caenorhabditis elegans Hypothetical pr... 26 7.2
Z46242-2|CAA86335.2| 683|Caenorhabditis elegans Hypothetical pr... 26 7.2
AL021447-5|CAA16268.4| 312|Caenorhabditis elegans Hypothetical ... 26 7.2
AF000265-5|AAK68197.1| 331|Caenorhabditis elegans Hypothetical ... 26 7.2
AC024818-3|AAF60780.2| 453|Caenorhabditis elegans Hypothetical ... 26 7.2
Z81593-1|CAB04738.1| 608|Caenorhabditis elegans Hypothetical pr... 26 9.5
Z32683-2|CAA83619.1| 226|Caenorhabditis elegans Hypothetical pr... 26 9.5
Z31590-4|CAD27606.1| 495|Caenorhabditis elegans Hypothetical pr... 26 9.5
Z31590-3|CAD27605.1| 607|Caenorhabditis elegans Hypothetical pr... 26 9.5
Z31590-2|CAD27604.1| 538|Caenorhabditis elegans Hypothetical pr... 26 9.5
Z31590-1|CAA83461.1| 605|Caenorhabditis elegans Hypothetical pr... 26 9.5
U39742-6|AAK39195.2| 1059|Caenorhabditis elegans Hypothetical pr... 26 9.5
AC024867-3|AAK68601.2| 327|Caenorhabditis elegans Eukaryotic in... 26 9.5
>AL021481-1|CAA16333.1| 363|Caenorhabditis elegans Hypothetical
protein Y43F4B.4 protein.
Length = 363
Score = 64.5 bits (150), Expect = 2e-11
Identities = 23/31 (74%), Positives = 28/31 (90%)
Frame = +2
Query: 236 GSVWKVTWAHPEFGQVIATCSFDRTAAIWEE 328
G+VW+V WAHPEFGQ++ATCS+DRT IWEE
Sbjct: 63 GAVWRVIWAHPEFGQIVATCSYDRTIVIWEE 93
Score = 62.9 bits (146), Expect = 7e-11
Identities = 26/52 (50%), Positives = 35/52 (67%)
Frame = +1
Query: 76 QTIFADHKDLIHDVAYDFYGERMATCSSDQYVKVWDSDGHGGWRLTTSWKAH 231
QT+ A H+DLIH V++D +G RMATC+SD + +WD G WR + WK H
Sbjct: 11 QTVGA-HRDLIHCVSFDPHGRRMATCASDMTMAIWDRKPDGNWRRSAHWKCH 61
Score = 25.8 bits (54), Expect = 9.5
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 275 GQVIATCSFDRTAAIWEEVGD 337
G+ +ATC+ D T AIW+ D
Sbjct: 29 GRRMATCASDMTMAIWDRKPD 49
>AC024214-18|AAF36083.1| 211|Caenorhabditis elegans Nuclear pore
complex protein protein20, isoform b protein.
Length = 211
Score = 50.4 bits (115), Expect = 4e-07
Identities = 20/39 (51%), Positives = 29/39 (74%)
Frame = +2
Query: 212 QLVGKHTSGSVWKVTWAHPEFGQVIATCSFDRTAAIWEE 328
+LVG SG VWKV+WAHP++G ++A+ S+D+ IW E
Sbjct: 53 ELVGH--SGPVWKVSWAHPKYGGLLASASYDKKVIIWNE 89
Score = 44.8 bits (101), Expect = 2e-05
Identities = 18/41 (43%), Positives = 26/41 (63%)
Frame = +1
Query: 76 QTIFADHKDLIHDVAYDFYGERMATCSSDQYVKVWDSDGHG 198
Q I H+D IHD + YG R+ATC SD+ VK+++ +G
Sbjct: 6 QRIDTQHRDAIHDAQLNIYGSRLATCGSDRLVKIFEVRPNG 46
>AC024214-17|AAF36082.1| 313|Caenorhabditis elegans Nuclear pore
complex protein protein20, isoform a protein.
Length = 313
Score = 50.4 bits (115), Expect = 4e-07
Identities = 20/39 (51%), Positives = 29/39 (74%)
Frame = +2
Query: 212 QLVGKHTSGSVWKVTWAHPEFGQVIATCSFDRTAAIWEE 328
+LVG SG VWKV+WAHP++G ++A+ S+D+ IW E
Sbjct: 53 ELVGH--SGPVWKVSWAHPKYGGLLASASYDKKVIIWNE 89
Score = 44.8 bits (101), Expect = 2e-05
Identities = 18/41 (43%), Positives = 26/41 (63%)
Frame = +1
Query: 76 QTIFADHKDLIHDVAYDFYGERMATCSSDQYVKVWDSDGHG 198
Q I H+D IHD + YG R+ATC SD+ VK+++ +G
Sbjct: 6 QRIDTQHRDAIHDAQLNIYGSRLATCGSDRLVKIFEVRPNG 46
>Z81113-5|CAB03282.3| 404|Caenorhabditis elegans Hypothetical
protein T03F6.5 protein.
Length = 404
Score = 38.7 bits (86), Expect = 0.001
Identities = 13/30 (43%), Positives = 22/30 (73%)
Frame = +1
Query: 94 HKDLIHDVAYDFYGERMATCSSDQYVKVWD 183
H D ++D+A D G+++ +CSSD +K+WD
Sbjct: 147 HTDAVNDIAIDAAGKQLVSCSSDLSIKLWD 176
Score = 26.2 bits (55), Expect = 7.2
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1
Query: 142 MATCSSDQYVKVWD 183
MA+CS D +KVWD
Sbjct: 121 MASCSEDATIKVWD 134
>AF164430-1|AAF82632.1| 404|Caenorhabditis elegans LIS-1 protein.
Length = 404
Score = 38.7 bits (86), Expect = 0.001
Identities = 13/30 (43%), Positives = 22/30 (73%)
Frame = +1
Query: 94 HKDLIHDVAYDFYGERMATCSSDQYVKVWD 183
H D ++D+A D G+++ +CSSD +K+WD
Sbjct: 147 HTDAVNDIAIDAAGKQLVSCSSDLSIKLWD 176
Score = 26.2 bits (55), Expect = 7.2
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1
Query: 142 MATCSSDQYVKVWD 183
MA+CS D +KVWD
Sbjct: 121 MASCSEDATIKVWD 134
>AF039711-10|AAB96707.2| 567|Caenorhabditis elegans Yeast prp
(splicing factor) relatedprotein 17 protein.
Length = 567
Score = 37.5 bits (83), Expect = 0.003
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +1
Query: 85 FADHKDLIHDVAYDFYGERMATCSSDQYVKVWDSD-GHGGWRLTTSWKAHQRFCLESH 255
+A HK + +VA++ G + S D+YVK+WD++ G R T H +CL+ H
Sbjct: 315 YAGHKLPVREVAFNNEGTEFLSASFDRYVKLWDTETGQVKQRFHT---GHVPYCLKYH 369
>U53340-3|AAA96208.1| 578|Caenorhabditis elegans Hypothetical
protein F02E8.5 protein.
Length = 578
Score = 35.5 bits (78), Expect = 0.012
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 133 GERMATCSSDQYVKVWDSDGHGGW 204
GE AT SD+ +K+W DGHGG+
Sbjct: 303 GETFATGGSDRNIKIWKVDGHGGY 326
>AL034393-7|CAA22322.2| 337|Caenorhabditis elegans Hypothetical
protein Y18D10A.9 protein.
Length = 337
Score = 32.7 bits (71), Expect = 0.083
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 224 KHTSGSVWKVTWAHPEFGQVIATCSFDRTAAIWEEVGD 337
K + VW W H G+++A+C D+ +W VG+
Sbjct: 14 KDDTSRVWMTCWHHG--GRILASCGDDKAVRVWSLVGE 49
Score = 25.8 bits (54), Expect = 9.5
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 215 LVGKHTSGSVWKVTW-AHPEFGQVIATCSFDRTAAIWE 325
+VG+H V V W +P+F ++ + S D T +WE
Sbjct: 298 VVGRHEL-DVNHVAWNPNPKFSNLLTSASDDGTIRLWE 334
>Z82266-11|CAB05177.4| 1192|Caenorhabditis elegans Hypothetical
protein F23B2.4 protein.
Length = 1192
Score = 32.3 bits (70), Expect = 0.11
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 94 HKDLIHDVAYDFYGERMATCSSDQYVKVWDSDGHGGWR 207
HKDL++ VA+ GE A+ +D+ V +W+ G R
Sbjct: 59 HKDLVYTVAWSHNGELFASGGADKLVILWNEKHEGTLR 96
>Z73978-3|CAA98293.1| 501|Caenorhabditis elegans Hypothetical
protein ZC302.2a protein.
Length = 501
Score = 32.3 bits (70), Expect = 0.11
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 94 HKDLIHDVAYDFYGERMATCSSDQYVKVWDS 186
H D I ++Y+ G MAT S D ++VWD+
Sbjct: 338 HSDPITSISYNHDGNTMATSSYDGCIRVWDA 368
Score = 26.2 bits (55), Expect = 7.2
Identities = 9/40 (22%), Positives = 21/40 (52%)
Frame = +1
Query: 67 FEAQTIFADHKDLIHDVAYDFYGERMATCSSDQYVKVWDS 186
F + H + + + + G+ + T S+D+ +KVW++
Sbjct: 203 FSLVKTISGHTKSVSVIKFSYCGKYLGTGSADKQIKVWNT 242
>DQ360810-1|ABC88647.1| 1192|Caenorhabditis elegans intraflagellar
transport protein protein.
Length = 1192
Score = 32.3 bits (70), Expect = 0.11
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 94 HKDLIHDVAYDFYGERMATCSSDQYVKVWDSDGHGGWR 207
HKDL++ VA+ GE A+ +D+ V +W+ G R
Sbjct: 59 HKDLVYTVAWSHNGELFASGGADKLVILWNEKHEGTLR 96
>Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical
protein Y76A2B.1 protein.
Length = 1057
Score = 31.5 bits (68), Expect = 0.19
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +1
Query: 22 IYPFFAMGELTATNLFEAQTIFADHKDLIHDVAY-DFYGERMATCSSDQYVKVW 180
+ P A G T ++ I A H + + D + F E +ATCS D+ VK+W
Sbjct: 59 VLPITAKGRRTRNDI----GIIAAHGEQVADFGFLTFADELLATCSRDEPVKIW 108
>AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical
protein Y76A2B.1 protein.
Length = 1057
Score = 31.5 bits (68), Expect = 0.19
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +1
Query: 22 IYPFFAMGELTATNLFEAQTIFADHKDLIHDVAY-DFYGERMATCSSDQYVKVW 180
+ P A G T ++ I A H + + D + F E +ATCS D+ VK+W
Sbjct: 59 VLPITAKGRRTRNDI----GIIAAHGEQVADFGFLTFADELLATCSRDEPVKIW 108
>AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein.
Length = 1057
Score = 31.5 bits (68), Expect = 0.19
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +1
Query: 22 IYPFFAMGELTATNLFEAQTIFADHKDLIHDVAY-DFYGERMATCSSDQYVKVW 180
+ P A G T ++ I A H + + D + F E +ATCS D+ VK+W
Sbjct: 59 VLPITAKGRRTRNDI----GIIAAHGEQVADFGFLTFADELLATCSRDEPVKIW 108
>Z71181-10|CAA94901.2| 678|Caenorhabditis elegans Hypothetical
protein K07C5.8 protein.
Length = 678
Score = 30.3 bits (65), Expect = 0.44
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 94 HKDLIHDVAYDFYGERMATCSSDQYVKVWDSDGHG 198
H D I VAY R+ + SSD V++W+ G+G
Sbjct: 465 HTDAIWSVAYHSSNSRLVSASSDSTVRLWE-PGNG 498
>Z71177-11|CAA94873.2| 678|Caenorhabditis elegans Hypothetical
protein K07C5.8 protein.
Length = 678
Score = 30.3 bits (65), Expect = 0.44
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 94 HKDLIHDVAYDFYGERMATCSSDQYVKVWDSDGHG 198
H D I VAY R+ + SSD V++W+ G+G
Sbjct: 465 HTDAIWSVAYHSSNSRLVSASSDSTVRLWE-PGNG 498
>Z81490-1|CAB04014.1| 510|Caenorhabditis elegans Hypothetical
protein CC4.3 protein.
Length = 510
Score = 29.9 bits (64), Expect = 0.58
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 94 HKDLIHDVAYDFYGERMATCSSDQYVKVWDSDGHGGWRLTT 216
H I DV Y G + +CS+D ++VW G G L+T
Sbjct: 348 HSSYITDVRYSDEGNHIISCSTDGSIRVW--HGKSGECLST 386
>AF330595-1|AAK00353.1| 510|Caenorhabditis elegans SMU-1 protein.
Length = 510
Score = 29.9 bits (64), Expect = 0.58
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 94 HKDLIHDVAYDFYGERMATCSSDQYVKVWDSDGHGGWRLTT 216
H I DV Y G + +CS+D ++VW G G L+T
Sbjct: 348 HSSYITDVRYSDEGNHIISCSTDGSIRVW--HGKSGECLST 386
>AF016431-1|AAC24248.2| 311|Caenorhabditis elegans Hypothetical
protein C10B5.1 protein.
Length = 311
Score = 29.9 bits (64), Expect = 0.58
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +2
Query: 215 LVGKHTSGSVWKVTWAHPEFGQVIATCSFDRTAAIWE 325
L H+S ++ + W PE G+++ S D T ++W+
Sbjct: 274 LTNAHSS-TISSIIWLPPEQGEIVIATSSDSTVSLWK 309
>AL032627-14|CAA21549.1| 386|Caenorhabditis elegans Hypothetical
protein Y41C4A.11 protein.
Length = 386
Score = 29.5 bits (63), Expect = 0.77
Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Frame = +1
Query: 64 LFEAQTI-----FADHKDLIHDVAYDFYGERMATCSSDQYVKVWDSDGHGGWRLTTSWKA 228
+F+A+T F H D I + + + S D+ ++VWD + WR+ ++
Sbjct: 175 IFDAETFSLINEFTAHSDFIRSLTVHPTLPYLISASDDRKIRVWDWENE--WRMEQEFQE 232
Query: 229 HQRFCLE 249
H + ++
Sbjct: 233 HAHYIMQ 239
>Z80215-3|CAB02270.1| 496|Caenorhabditis elegans Hypothetical
protein C36B1.5 protein.
Length = 496
Score = 28.7 bits (61), Expect = 1.3
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 82 IFAD-HKDLIHDVAYDFYGERMATCSSDQYVKVWD 183
+F D H IH V + G M T SSD +KVWD
Sbjct: 374 MFLDGHTKEIHSVEWMPNGYEMITGSSDNSMKVWD 408
>Z78544-3|CAB01760.1| 395|Caenorhabditis elegans Hypothetical
protein K04G11.4 protein.
Length = 395
Score = 28.3 bits (60), Expect = 1.8
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +1
Query: 79 TIFA--DHKDLIHDVAYDFYGERMATCSSDQYVKVWDS 186
TIF+ H+D + V ++ G +A+ S D V++WDS
Sbjct: 224 TIFSIPGHEDPVSSVCFNRDGAYLASGSYDGIVRIWDS 261
>Z68342-4|CAA92776.1| 1000|Caenorhabditis elegans Hypothetical
protein F38E11.5 protein.
Length = 1000
Score = 28.3 bits (60), Expect = 1.8
Identities = 15/63 (23%), Positives = 26/63 (41%)
Frame = +1
Query: 61 NLFEAQTIFADHKDLIHDVAYDFYGERMATCSSDQYVKVWDSDGHGGWRLTTSWKAHQRF 240
N E F H D + + + + S D VK+WD D W + S++ H +
Sbjct: 87 NTLERVHQFEAHSDYLRSLVVHPTLPYVISSSDDMLVKMWDWDNK--WAMKQSFEGHTHY 144
Query: 241 CLE 249
++
Sbjct: 145 VMQ 147
Score = 27.5 bits (58), Expect = 3.1
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = +2
Query: 263 HPEFGQVIATCSFDRTAAIWE---EVGDTTASGSEKG 364
+P+ AT S D+T +W+ V + T G EKG
Sbjct: 151 NPKDNNTFATASLDKTVKVWQFGSNVPNFTLEGHEKG 187
>Z99278-1|CAB16490.1| 793|Caenorhabditis elegans Hypothetical
protein Y53C12B.1 protein.
Length = 793
Score = 27.9 bits (59), Expect = 2.4
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +1
Query: 94 HKDLIHDVAYDFYGERMATCSSDQYVKVWD 183
H+ + DV + ++A+CS D +K+W+
Sbjct: 522 HRRGVGDVKFAKNSHKLASCSGDMTIKIWN 551
>Z83016-1|CAB05407.1| 451|Caenorhabditis elegans Hypothetical
protein F46C5.9 protein.
Length = 451
Score = 27.9 bits (59), Expect = 2.4
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 79 TIFADHKDLIHDVAYDFYGERMATCSSDQYVKVWD 183
++ HK + DVA+ G++ + S D+ V +WD
Sbjct: 85 SVLKGHKKEVTDVAFASDGKKFVSISGDRSVILWD 119
>Z68315-3|CAA92670.1| 430|Caenorhabditis elegans Hypothetical
protein F28C6.3 protein.
Length = 430
Score = 27.9 bits (59), Expect = 2.4
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +1
Query: 94 HKDLIHDVAYDFYGERMATCSSDQYVKVWD 183
H + + DV Y T S D +VK+WD
Sbjct: 258 HTESVTDVHYSENARLYVTASKDGHVKIWD 287
>Z68314-8|CAA92666.1| 451|Caenorhabditis elegans Hypothetical
protein F46C5.9 protein.
Length = 451
Score = 27.9 bits (59), Expect = 2.4
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 79 TIFADHKDLIHDVAYDFYGERMATCSSDQYVKVWD 183
++ HK + DVA+ G++ + S D+ V +WD
Sbjct: 85 SVLKGHKKEVTDVAFASDGKKFVSISGDRSVILWD 119
>Z54281-9|CAA91052.1| 451|Caenorhabditis elegans Hypothetical
protein F46C5.9 protein.
Length = 451
Score = 27.9 bits (59), Expect = 2.4
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 79 TIFADHKDLIHDVAYDFYGERMATCSSDQYVKVWD 183
++ HK + DVA+ G++ + S D+ V +WD
Sbjct: 85 SVLKGHKKEVTDVAFASDGKKFVSISGDRSVILWD 119
>AL132904-13|CAC35846.4| 778|Caenorhabditis elegans Hypothetical
protein Y111B2A.17 protein.
Length = 778
Score = 27.9 bits (59), Expect = 2.4
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = +1
Query: 43 GELTATNLFEAQTIFADHKDLIHDVAYDFYGERM--ATCSSDQYVKVW 180
GE F A H D IH +A++ + + A+ D YV++W
Sbjct: 189 GESADKKSFSRLISVAGHTDWIHSIAFNDNPDHLLVASAGQDTYVRLW 236
Score = 26.6 bits (56), Expect = 5.4
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 242 VWKVTWAHPEFGQVIATCSFDRTAAIWEEV 331
V W++ G+V+ T S D+T IW+E+
Sbjct: 290 VHSTVWSND--GRVLLTASSDKTCIIWKEI 317
>Z92813-7|CAB07283.2| 758|Caenorhabditis elegans Hypothetical
protein T28A8.7 protein.
Length = 758
Score = 27.1 bits (57), Expect = 4.1
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +1
Query: 28 PFFAMGELTAT--NLFEAQTIFADHKDLIHD 114
P +A E+ A N F A+ + A+H DL+HD
Sbjct: 597 PNYAAFEVFANVENRFAAEKLLAEHADLLHD 627
>Z81099-1|CAB03187.1| 600|Caenorhabditis elegans Hypothetical
protein K08F9.2 protein.
Length = 600
Score = 27.1 bits (57), Expect = 4.1
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 94 HKDLIHDVAYDFYGERMATCSSDQYVKVWD 183
H I +A+ R+AT S+D+ VK+WD
Sbjct: 236 HTGSIFALAWSPDQSRIATASADKSVKIWD 265
>AL110500-12|CAB60432.1| 362|Caenorhabditis elegans Hypothetical
protein Y87G2A.11 protein.
Length = 362
Score = 27.1 bits (57), Expect = 4.1
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +1
Query: 142 MATCSSDQYVKVWDS 186
+ATC D YV++WD+
Sbjct: 224 IATCGDDGYVRIWDT 238
>AF047651-2|AAL13318.1| 486|Caenorhabditis elegans Hypothetical
protein C05D2.10b protein.
Length = 486
Score = 27.1 bits (57), Expect = 4.1
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +1
Query: 70 EAQTIFADHKDLIHDVAYDFYGERMATCSSDQYVKVWD 183
++ +F H+D + V+++ R+ + S D VK+WD
Sbjct: 356 QSVAVFQGHQDSVTSVSFNT-DYRIVSSSDDATVKIWD 392
Score = 26.6 bits (56), Expect = 5.4
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +1
Query: 67 FEAQTIFADHKDLIHDVAYDFYGERMATCSSDQYVKVW 180
F + HKD + VA D A+ S+DQ ++W
Sbjct: 130 FRLSRLLEGHKDGVWHVAADSTRNICASASADQTARIW 167
Score = 25.8 bits (54), Expect = 9.5
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +2
Query: 275 GQVIATCSFDRTAAIWE 325
GQ + T S+DRTA +W+
Sbjct: 292 GQQMVTASWDRTANVWD 308
>AF047651-1|AAK67207.1| 484|Caenorhabditis elegans Hypothetical
protein C05D2.10a protein.
Length = 484
Score = 27.1 bits (57), Expect = 4.1
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +1
Query: 70 EAQTIFADHKDLIHDVAYDFYGERMATCSSDQYVKVWD 183
++ +F H+D + V+++ R+ + S D VK+WD
Sbjct: 354 QSVAVFQGHQDSVTSVSFNT-DYRIVSSSDDATVKIWD 390
Score = 26.6 bits (56), Expect = 5.4
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +1
Query: 67 FEAQTIFADHKDLIHDVAYDFYGERMATCSSDQYVKVW 180
F + HKD + VA D A+ S+DQ ++W
Sbjct: 128 FRLSRLLEGHKDGVWHVAADSTRNICASASADQTARIW 165
Score = 25.8 bits (54), Expect = 9.5
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +2
Query: 275 GQVIATCSFDRTAAIWE 325
GQ + T S+DRTA +W+
Sbjct: 290 GQQMVTASWDRTANVWD 306
>U41278-1|AAK31511.1| 305|Caenorhabditis elegans Hypothetical
protein F33G12.2 protein.
Length = 305
Score = 26.6 bits (56), Expect = 5.4
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 106 IHDVAYDFYGERMATCSSDQYVKVWD 183
+ V Y+ G TC SD+ VK+W+
Sbjct: 19 VRAVRYNVDGNYCVTCGSDKTVKLWN 44
>Z70684-1|CAA94597.1| 580|Caenorhabditis elegans Hypothetical
protein F28D1.1 protein.
Length = 580
Score = 26.2 bits (55), Expect = 7.2
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +1
Query: 94 HKDLIHDVAYDFYGERMATCSSDQYVKVWD 183
H + +A D G MAT D+ ++WD
Sbjct: 331 HLSAVKGIAVDDQGNYMATTGLDRKCRIWD 360
>Z46242-3|CAA86338.2| 680|Caenorhabditis elegans Hypothetical
protein F35G12.4b protein.
Length = 680
Score = 26.2 bits (55), Expect = 7.2
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 94 HKDLIHDVAYDFYGERMATCSSDQYVKVWD 183
H D ++D+ +G+ + + S+D VKVW+
Sbjct: 89 HTDWVNDMILCGHGKILISASNDTTVKVWN 118
>Z46242-2|CAA86335.2| 683|Caenorhabditis elegans Hypothetical
protein F35G12.4a protein.
Length = 683
Score = 26.2 bits (55), Expect = 7.2
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 94 HKDLIHDVAYDFYGERMATCSSDQYVKVWD 183
H D ++D+ +G+ + + S+D VKVW+
Sbjct: 89 HTDWVNDMILCGHGKILISASNDTTVKVWN 118
>AL021447-5|CAA16268.4| 312|Caenorhabditis elegans Hypothetical
protein F19B2.3 protein.
Length = 312
Score = 26.2 bits (55), Expect = 7.2
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -3
Query: 132 VEVVCNIVDKIFVISEYGLSLK*VGCRKFPHCK-KRIYSNY 13
+ ++CNI++ ++ +Y LS K V FP +I SNY
Sbjct: 79 IHIICNIIEFFPMLYDYYLSFK-VPSECFPFAPYSKIVSNY 118
>AF000265-5|AAK68197.1| 331|Caenorhabditis elegans Hypothetical
protein C18E3.5 protein.
Length = 331
Score = 26.2 bits (55), Expect = 7.2
Identities = 9/36 (25%), Positives = 19/36 (52%)
Frame = +1
Query: 82 IFADHKDLIHDVAYDFYGERMATCSSDQYVKVWDSD 189
+ HK I +V ++ + + +D+ V+VWD +
Sbjct: 74 VLKGHKGAIMEVKFNADSSHLVSAGTDKTVRVWDME 109
>AC024818-3|AAF60780.2| 453|Caenorhabditis elegans Hypothetical
protein Y54H5A.1 protein.
Length = 453
Score = 26.2 bits (55), Expect = 7.2
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +1
Query: 94 HKDLIHDVAYD-FYGERMATCSSDQYVKVWDS 186
HK + D+A+ +A+CS+D +K+WD+
Sbjct: 274 HKKSVEDLAWSPTETGLLASCSADGSIKLWDT 305
>Z81593-1|CAB04738.1| 608|Caenorhabditis elegans Hypothetical
protein T20B3.1 protein.
Length = 608
Score = 25.8 bits (54), Expect = 9.5
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Frame = +1
Query: 166 YVKVWDSDGHGGWRLTTS----WKAHQRFCLESHMGTPR 270
++ VWD HG W +T+S W Q L S TP+
Sbjct: 118 WLSVWDKVRHGKWPVTSSRGVTWDMQQFHHLFSSNRTPQ 156
>Z32683-2|CAA83619.1| 226|Caenorhabditis elegans Hypothetical
protein R07E5.2 protein.
Length = 226
Score = 25.8 bits (54), Expect = 9.5
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -2
Query: 328 FLPDGSCTVKRTSCNDL 278
FL D S TV+ T+CNDL
Sbjct: 157 FLIDPSGTVRHTTCNDL 173
>Z31590-4|CAD27606.1| 495|Caenorhabditis elegans Hypothetical
protein R01H10.3d protein.
Length = 495
Score = 25.8 bits (54), Expect = 9.5
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 200 DGD*QLVGKHTSGSVWKVTWAHPEFGQVIATCSFDRTAAIW 322
D D V H + + +V W+ P VIA+CS D T +W
Sbjct: 69 DKDYPFVDAHKAPCL-EVAWS-PFNDNVIASCSEDTTCKVW 107
>Z31590-3|CAD27605.1| 607|Caenorhabditis elegans Hypothetical
protein R01H10.3c protein.
Length = 607
Score = 25.8 bits (54), Expect = 9.5
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 200 DGD*QLVGKHTSGSVWKVTWAHPEFGQVIATCSFDRTAAIW 322
D D V H + + +V W+ P VIA+CS D T +W
Sbjct: 69 DKDYPFVDAHKAPCL-EVAWS-PFNDNVIASCSEDTTCKVW 107
>Z31590-2|CAD27604.1| 538|Caenorhabditis elegans Hypothetical
protein R01H10.3b protein.
Length = 538
Score = 25.8 bits (54), Expect = 9.5
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 200 DGD*QLVGKHTSGSVWKVTWAHPEFGQVIATCSFDRTAAIW 322
D D V H + + +V W+ P VIA+CS D T +W
Sbjct: 69 DKDYPFVDAHKAPCL-EVAWS-PFNDNVIASCSEDTTCKVW 107
>Z31590-1|CAA83461.1| 605|Caenorhabditis elegans Hypothetical
protein R01H10.3a protein.
Length = 605
Score = 25.8 bits (54), Expect = 9.5
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 200 DGD*QLVGKHTSGSVWKVTWAHPEFGQVIATCSFDRTAAIW 322
D D V H + + +V W+ P VIA+CS D T +W
Sbjct: 69 DKDYPFVDAHKAPCL-EVAWS-PFNDNVIASCSEDTTCKVW 107
>U39742-6|AAK39195.2| 1059|Caenorhabditis elegans Hypothetical
protein C25F6.3 protein.
Length = 1059
Score = 25.8 bits (54), Expect = 9.5
Identities = 8/29 (27%), Positives = 16/29 (55%)
Frame = +2
Query: 95 TKILSTMLHTTSTEKGWPLVRATSMSRYG 181
T +S+++H + WP + +T + YG
Sbjct: 749 TNTVSSLMHMKADGNAWPAIGSTKRTTYG 777
>AC024867-3|AAK68601.2| 327|Caenorhabditis elegans Eukaryotic
initiation factor protein3.I protein.
Length = 327
Score = 25.8 bits (54), Expect = 9.5
Identities = 14/56 (25%), Positives = 25/56 (44%)
Frame = +1
Query: 94 HKDLIHDVAYDFYGERMATCSSDQYVKVWDSDGHGGWRLTTSWKAHQRFCLESHMG 261
H + D+ + + T S D VK+WD++ G T + + + C S+ G
Sbjct: 51 HNGAVWDIDVSWDTTKCVTASGDLTVKIWDAE-LGNCLYTINHQTPMKSCGFSYSG 105
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,783,648
Number of Sequences: 27780
Number of extensions: 211580
Number of successful extensions: 665
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 514188384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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