Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_H17
         (497 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379...   106   1e-23
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924...    99   1e-21
03_05_0412 + 23993452-23994068,23996249-23996350,23996799-239969...    30   1.2  
04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251     27   6.3  
02_05_0902 + 32620668-32621209,32621847-32622258,32622471-326226...    27   6.3  
03_06_0234 - 32535281-32535919,32536121-32536860,32536911-32536953     27   8.4  

>04_04_0211 -
           23636377-23636532,23636624-23636805,23637853-23637959,
           23637997-23638280
          Length = 242

 Score =  106 bits (254), Expect = 1e-23
 Identities = 69/157 (43%), Positives = 83/157 (52%), Gaps = 2/157 (1%)
 Frame = +3

Query: 12  RPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGTSTK 191
           R ++TPGTV ILLAGR  GKR              TGPF  N  P+RR+ Q YVI TSTK
Sbjct: 95  RSSITPGTVLILLAGRFMGKRVVFLKQLKSGLLLVTGPFKINGVPIRRVNQPYVIATSTK 154

Query: 192 VDLGDFKLPAHLDDAYFXXXXXXXXXXXXXXQGEDIFATKKE--KYVPSEQRKADQKLVD 365
           VD+    +    DD YF              +GE +F T+KE  K +P E +K DQK+VD
Sbjct: 155 VDISGVNV-EKFDDKYF---SRDKKQKAKKTEGE-LFETEKEATKNLP-EFKKEDQKVVD 208

Query: 366 EAVIKAIRLRPDKKTLRGYLRASFGLRSSQFPHRLRF 476
             +IKAI   PD KT   YL A F LR    PH + F
Sbjct: 209 AELIKAIEAVPDLKT---YLGARFSLRDGDKPHEMVF 242


>02_04_0433 -
           22891261-22891509,22892181-22892301,22892405-22892496,
           22892692-22892755,22892855-22892920,22893102-22893193,
           22893991-22894050,22894181-22894270,22894484-22894613,
           22895066-22895157,22895299-22895373,22895663-22895754,
           22896496-22896586,22897541-22897574,22897745-22897791,
           22899110-22899209,22899300-22899436,22900837-22901015,
           22901146-22901188,22901264-22901297,22901839-22901948,
           22902043-22902224,22903062-22903168,22903266-22903480
          Length = 833

 Score =   99 bits (238), Expect = 1e-21
 Identities = 66/155 (42%), Positives = 85/155 (54%), Gaps = 2/155 (1%)
 Frame = +3

Query: 3   TRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGT 182
           T+ R  +TPGTV ILLAGR+ GKR              TGPF  N  P+RR+ Q YVI T
Sbjct: 69  TKLRSTITPGTVLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVPIRRVNQAYVIAT 128

Query: 183 STKVDLGDFKLPAHLDDAYFXXXXXXXXXXXXXXQGEDIFATKKE--KYVPSEQRKADQK 356
           STKVD+   K+    DD YF              +GE +F T+KE  K +P + +K DQK
Sbjct: 129 STKVDISGVKVD-KFDDKYF---ARDKKAKAKKTEGE-LFETEKEATKNLP-DFKKDDQK 182

Query: 357 LVDEAVIKAIRLRPDKKTLRGYLRASFGLRSSQFP 461
            VD  +IKAI + PD   L+ YL    G R+S++P
Sbjct: 183 AVDAELIKAIEVVPD---LKSYL----GARNSRWP 210


>03_05_0412 +
           23993452-23994068,23996249-23996350,23996799-23996994,
           23997075-23997259,23997394-23997498,23997625-23997722,
           23997832-23998067,23998314-23998382,23999768-23999833,
           24000513-24000611,24000688-24000750
          Length = 611

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 166 RCGILRRGHALKAKGPVKSSRPLGNTPTSTT 74
           RCG+ ++GH   A GP  +  P  ++  +TT
Sbjct: 23  RCGLPKKGHVCAAGGPAPTPSPSSSSGAATT 53


>04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251
          Length = 1821

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = -2

Query: 121 PVKSSRPLGNTPTSTTRLPACLPANRMHTVPGVRLG 14
           P+KS+ P GN    TTRL +   A R+ TV  + LG
Sbjct: 440 PLKSNHPKGNMILVTTRLLSL--AQRIGTVKPIELG 473


>02_05_0902 +
           32620668-32621209,32621847-32622258,32622471-32622675,
           32622712-32622806,32622945-32623557,32623652-32623820,
           32624392-32624749,32625226-32625336,32626207-32626561,
           32627262-32627484,32627837-32628058,32628628-32628781
          Length = 1152

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
 Frame = +3

Query: 300 FATKKEKYVPSEQRKADQKLVDEAVI----KAIRLRPDKKTLRGYLRASFGLRSS 452
           FA  ++K   ++ +KA +    E  I    KA+ L PD + L  YL  ++G R S
Sbjct: 314 FARFQDKVASTQPQKAARLQTTERKISILEKAVELNPDNEELLLYLLKAYGERDS 368


>03_06_0234 - 32535281-32535919,32536121-32536860,32536911-32536953
          Length = 473

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 383 DQTPARQEDTPRLPQGLVRAPIESVPAPSA 472
           D    + ED P +P+ ++  P+E+VP P A
Sbjct: 222 DTVLGQDEDAP-VPKDVIPEPVEAVPTPKA 250


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,056,983
Number of Sequences: 37544
Number of extensions: 242981
Number of successful extensions: 767
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)