Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_H16
(534 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 179 2e-46
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 176 1e-45
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 93 2e-20
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 57 1e-09
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 29 0.58
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S... 28 0.76
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz... 27 1.8
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate... 27 2.3
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy... 26 4.1
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 25 7.1
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo... 25 9.4
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc... 25 9.4
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 179 bits (436), Expect = 2e-46
Identities = 80/102 (78%), Positives = 90/102 (88%)
Frame = +2
Query: 206 NRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLS 385
NRLI Q+VSSITASLRF+G+LNVDL EFQTNLVPYPRIHFPLVTYAP++SA KA+HE S
Sbjct: 228 NRLIAQVVSSITASLRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHESNS 287
Query: 386 VAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKGRQ 511
V EITN CFEP NQMVKCDPR G+YMA C+LYRGDV+P+ Q
Sbjct: 288 VQEITNQCFEPYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQ 329
Score = 120 bits (288), Expect = 2e-28
Identities = 51/70 (72%), Positives = 63/70 (90%)
Frame = +3
Query: 9 KKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERP 188
KKSKL+F++YPAPQVST+VVEPYNS+LTTH TL+ +DC FMVDNE+ YDICRRNLDIERP
Sbjct: 163 KKSKLQFSVYPAPQVSTSVVEPYNSVLTTHATLDLADCTFMVDNESCYDICRRNLDIERP 222
Query: 189 TYTNLQIVLS 218
+Y NL +++
Sbjct: 223 SYENLNRLIA 232
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 176 bits (429), Expect = 1e-45
Identities = 79/102 (77%), Positives = 89/102 (87%)
Frame = +2
Query: 206 NRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLS 385
NRLI Q+VSSITASLRF G+LNVDL EFQTNLVPYPRIHFPLVTY+P++SA KA+HE S
Sbjct: 232 NRLIAQVVSSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNS 291
Query: 386 VAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKGRQ 511
V EITN CFEP NQMVKCDPR G+YMA C+LYRGDV+P+ Q
Sbjct: 292 VQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQ 333
Score = 123 bits (297), Expect = 1e-29
Identities = 53/70 (75%), Positives = 63/70 (90%)
Frame = +3
Query: 9 KKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERP 188
KKS L+F++YPAPQVST+VVEPYNS+LTTH TL++SDC FMVDNEA YDICRRNLDIERP
Sbjct: 167 KKSNLQFSVYPAPQVSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDICRRNLDIERP 226
Query: 189 TYTNLQIVLS 218
TY NL +++
Sbjct: 227 TYENLNRLIA 236
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 93.5 bits (222), Expect = 2e-20
Identities = 40/99 (40%), Positives = 61/99 (61%)
Frame = +2
Query: 206 NRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLS 385
N L+ +++ +T S RF G LN DL + N+VP+PR+HF +V +AP+ + + + +S
Sbjct: 226 NHLVSAVMAGVTTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVS 285
Query: 386 VAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPK 502
V E+T F+ N MV DPRHG+Y+ L+RG V K
Sbjct: 286 VPELTQQMFDANNMMVAADPRHGRYLTVAALFRGKVSMK 324
Score = 63.3 bits (147), Expect = 2e-11
Identities = 29/65 (44%), Positives = 43/65 (66%)
Frame = +3
Query: 27 FAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLQ 206
F++ PAP+ S VVEPYN+ L+ H +E+SD F +DNEA+ I L I+ P+Y +L
Sbjct: 167 FSVAPAPKSSDTVVEPYNATLSMHQLVENSDETFCIDNEALSSIFANTLKIKSPSYDDLN 226
Query: 207 IVLSA 221
++SA
Sbjct: 227 HLVSA 231
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 57.2 bits (132), Expect = 1e-09
Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 4/109 (3%)
Frame = +2
Query: 185 PDLHQPPNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVIS--- 355
P HQ N+L+ ++S+ T +LR+ G +N DL +L+P PR HF L +Y P +
Sbjct: 223 PTFHQQ-NQLVSTVMSASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQV 281
Query: 356 AEKAYHEQLSVAEITNACFEPANQMVKCDP-RHGKYMACCMLYRGDVVP 499
E + +V ++ P NQMV +P + +++ + +G+ P
Sbjct: 282 EEAKAIRKTTVLDVMRRLLLPKNQMVSVNPSKKSCFISILDIIQGEADP 330
Score = 40.7 bits (91), Expect = 1e-04
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +3
Query: 9 KKSKLEFAIYPAPQ-VSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIER 185
KK ++++P Q VS VV+PYNS+L ++D ++DN A+ I L +
Sbjct: 163 KKIIQTYSVFPNSQSVSDVVVQPYNSLLALKRLTLNADSVVVLDNAALAHIAADRLHTQN 222
Query: 186 PTY 194
PT+
Sbjct: 223 PTF 225
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 28.7 bits (61), Expect = 0.58
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +1
Query: 133 STMKPSMTSAAVTWILNARPTPTSKSSYRPDRIID-YRLSAFRRRPQCRSNGVPDQLGAL 309
S KPS S + T+ L+ PT + KS P + D Y LS+ NG D G+L
Sbjct: 20 SVSKPSTPSYS-TYSLS--PTFSDKSVLSPSTMSDSYALSSTYTAGSSYQNGESDYFGSL 76
Query: 310 PT 315
PT
Sbjct: 77 PT 78
>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
Vps33|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 28.3 bits (60), Expect = 0.76
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +3
Query: 84 ILTTHTTLEHSDCAFMVDNEAI-YDICRRNLDIERPTYTNLQIVLS-ARSYHR 236
I+TT+T EH NE I DI ++ + + RPTY N ++V + R + R
Sbjct: 39 IVTTNTLQEHGIPQVYWFNENIPNDIEKKTIYLCRPTYENAKLVATHVRQFQR 91
>SPCC1795.08c |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 985
Score = 27.1 bits (57), Expect = 1.8
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 141 EAIYDICRRNLDIERPTYTNLQIVLSARSYHRLPPL 248
EAI I ++ ++PT T I SA S +LPP+
Sbjct: 832 EAIRKILKKREFAKKPTMTKRAIAPSAASTEKLPPV 867
>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
transferase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 453
Score = 26.6 bits (56), Expect = 2.3
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +1
Query: 118 IVLSWSTMKPSMTSAAVTWILNARPTPTS 204
++ S+ T KP + TW +N R P S
Sbjct: 37 VIASYPTFKPVVNERCGTWYVNRRHAPIS 65
>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 754
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 197 QPPNRLIGQIVSSITASLRFDG 262
QP +RL+GQI S IT+ L+ G
Sbjct: 541 QPCSRLLGQIASWITSMLQIFG 562
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 25.0 bits (52), Expect = 7.1
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +2
Query: 197 QPPNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHE 376
QPP R+ I + + D L +EF+ N PYPR L ++ PV++ A E
Sbjct: 14 QPPPRVAEFIRQAQNEEVTSDLGLVSLCSEFRKNDWPYPR--GDLYSWVPVLNRFDAILE 71
Query: 377 QL 382
++
Sbjct: 72 RI 73
>SPAC1805.15c |pub2||ubiquitin-protein ligase
Pub2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 671
Score = 24.6 bits (51), Expect = 9.4
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +2
Query: 26 VRYLSRTPGVHCCCRALQLYPYN 94
V ++S+ P H C L + PYN
Sbjct: 627 VGHISQLPKAHTCFNRLDIPPYN 649
>SPBC428.07 |meu6||meiotic chromosome segregation protein
Meu6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 651
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 263 ALNVDLTEFQTNLVPYPRIHFPLVT 337
A +V++ E +TN +P HFP T
Sbjct: 368 AQSVEVPENETNQIPTTEEHFPATT 392
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,379,541
Number of Sequences: 5004
Number of extensions: 50117
Number of successful extensions: 161
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -