Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_H15
(393 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces po... 116 1e-27
SPAC732.01 |vma11||V-type ATPase proteolipid subunit|Schizosacch... 108 3e-25
SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces... 54 6e-09
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 28 0.45
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 26 2.4
SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|... 26 2.4
SPBC25H2.10c |||tRNA acetyltransferase |Schizosaccharomyces pomb... 25 3.2
SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr ... 25 3.2
SPAC23C4.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 5.5
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 25 5.5
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual 25 5.5
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe... 25 5.5
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 25 5.5
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 25 5.5
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ... 24 7.3
SPAC1039.08 |||serine acetyltransferase |Schizosaccharomyces pom... 24 7.3
SPBP23A10.16 |sdh4|tim18|TIM22 inner membrane protein import com... 24 7.3
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa... 24 7.3
SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10 |Schizo... 24 9.7
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 24 9.7
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ... 24 9.7
SPAC23H4.09 |cdb4||curved DNA-binding protein Cdb4|Schizosacchar... 24 9.7
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 24 9.7
SPBC106.02c |srx1||sulfiredoxin|Schizosaccharomyces pombe|chr 2|... 24 9.7
>SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 161
Score = 116 bits (279), Expect = 1e-27
Identities = 56/86 (65%), Positives = 70/86 (81%)
Frame = +3
Query: 135 PIYGPFFGVMGAASAIIFSSLGAAYGTAKSGTGIAAMAVMRPEQIMKSIIPVVMAGIIAI 314
P+Y PFFGVMG +AI+F+S GAAYGTAK+G GI+AM V+RP+ I+K+ IPVVMAGIIAI
Sbjct: 7 PVYAPFFGVMGCTAAIVFASFGAAYGTAKAGVGISAMGVLRPDLIVKNTIPVVMAGIIAI 66
Query: 315 YGLVVAVLSAGSLDQPSNNYTLYKGF 392
YGLVV+VL +G+L Q +LY GF
Sbjct: 67 YGLVVSVLISGNLKQ---ILSLYSGF 89
>SPAC732.01 |vma11||V-type ATPase proteolipid
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 162
Score = 108 bits (259), Expect = 3e-25
Identities = 49/86 (56%), Positives = 65/86 (75%)
Frame = +3
Query: 135 PIYGPFFGVMGAASAIIFSSLGAAYGTAKSGTGIAAMAVMRPEQIMKSIIPVVMAGIIAI 314
PIY FFG G ++++FS LGA YGTA +G GIAA+ RPE +MKS+IPVVM+GII +
Sbjct: 7 PIYSSFFGFAGVCASMVFSCLGAGYGTALAGRGIAAVGAFRPEIVMKSLIPVVMSGIIGV 66
Query: 315 YGLVVAVLSAGSLDQPSNNYTLYKGF 392
YGLV++VL AG + P N+Y+L+ GF
Sbjct: 67 YGLVMSVLIAGDM-SPDNDYSLFSGF 91
>SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 199
Score = 54.4 bits (125), Expect = 6e-09
Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Frame = +3
Query: 153 FGVMGAASAIIFSSLGAAYGTAKSGTGIAAMAVMRPEQIMKSIIPVVMAGIIAIYGLVVA 332
+G++G AS + F +GAA+G GT I AV P K++I ++ ++AIY L++A
Sbjct: 45 WGLLGIASCVAFGIIGAAWGIFICGTSILGGAVKAPRIKTKNLISIIFCEVVAIYSLIIA 104
Query: 333 VLSAGSLD--QPSNNYT---LYKGF 392
++ + ++ P+ YT Y GF
Sbjct: 105 IVFSAKINDINPAGFYTKSHYYTGF 129
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 28.3 bits (60), Expect = 0.45
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 138 LDFRPFFLNVGVFTGPKNSDDYLHTL 61
+DF P V TGP N+DDY+H +
Sbjct: 357 MDF-PNITQVVQITGPSNTDDYIHRI 381
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 25.8 bits (54), Expect = 2.4
Identities = 16/80 (20%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Frame = +3
Query: 150 FFG-VMGAASAIIFSSLGAAYGTAKSGTGIAAMAVMR-PEQIMKSIIPVVMAGIIAIYGL 323
F+G ++G + F+ + + ++ G + I+ S+ P+V++ IIA +
Sbjct: 1439 FYGEILGPLGTLFFTCIPFLFINSQPGNDDETQSTNAFIRLIIMSVAPLVLSAIIAFFFF 1498
Query: 324 VVAVLSAGSLDQPSNNYTLY 383
+ ++ L S Y +Y
Sbjct: 1499 CLGIMLRPILGDRSKTYGVY 1518
>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 397
Score = 25.8 bits (54), Expect = 2.4
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 46 VVSWSECVQIVIRVFGTCKYSHIQEKWPK 132
V S V I + F + SH+QEKW K
Sbjct: 96 VFSLIAVVLITVMGFAMLRVSHLQEKWRK 124
>SPBC25H2.10c |||tRNA acetyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 287
Score = 25.4 bits (53), Expect = 3.2
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +1
Query: 109 HIQEKWPKIQSMDLSLELWGRRLPSSSAPLVLHMAQPSQAPVLPP 243
HI WP+ QS D E G L + A + + + ++ +L P
Sbjct: 62 HIATLWPETQSSDQENEEEGEELEDAVAKEINSLQKKNKKELLTP 106
>SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 25.4 bits (53), Expect = 3.2
Identities = 21/72 (29%), Positives = 32/72 (44%)
Frame = +3
Query: 138 IYGPFFGVMGAASAIIFSSLGAAYGTAKSGTGIAAMAVMRPEQIMKSIIPVVMAGIIAIY 317
+YGPF+ A+ FS+ Y +G G + ++ K +I A II Y
Sbjct: 87 LYGPFWITTTVIQALFFSNSITEYARYATGHGTSGYSI-------KKLISA--ASIIYGY 137
Query: 318 GLVVAVLSAGSL 353
++AVL G L
Sbjct: 138 TTIIAVLLWGIL 149
>SPAC23C4.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 104
Score = 24.6 bits (51), Expect = 5.5
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +2
Query: 101 NTPTFKKNGRKSNLWTFLWSYGGGVCHHLQLPWCCIWHSQVR 226
++PT + + W S+G VC H++ CC ++S+++
Sbjct: 32 DSPTTVHHDERKESWR---SHGFIVCLHIRCCICCKYNSKIK 70
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 24.6 bits (51), Expect = 5.5
Identities = 8/31 (25%), Positives = 19/31 (61%)
Frame = -3
Query: 280 MDFMICSGRITAMAAIPVPDLAVPYAAPREL 188
++ ++ +G ++ +P+ DLA Y A R++
Sbjct: 283 LEAIVATGAKVVLSKLPIGDLATQYFADRDI 313
>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 478
Score = 24.6 bits (51), Expect = 5.5
Identities = 7/16 (43%), Positives = 10/16 (62%)
Frame = -1
Query: 261 QAASPPWRQYRCLTWL 214
Q ++PPW C +WL
Sbjct: 448 QGSAPPWHYIPCQSWL 463
>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 24.6 bits (51), Expect = 5.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 108 GVFTGPKNSDDYLHTLTPRNYFSTDN 31
G T K SDD ++T+TP + T+N
Sbjct: 8 GASTSVKPSDDAVNTVTPWSILLTNN 33
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 24.6 bits (51), Expect = 5.5
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = -1
Query: 150 KVHRLDFRPFFLNVGVFTGPKNSDDYLHTLTPRNYFSTDNM 28
KV +D + FL PKN +DY++ L + D +
Sbjct: 249 KVQNVDQKSGFLTSSETDVPKNINDYIYLLIDDRFVPPDRV 289
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 24.6 bits (51), Expect = 5.5
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 77 SSEFLGPVNTPTFKKNG 127
SS +L P +P FKKNG
Sbjct: 169 SSGYLHPKTSPIFKKNG 185
>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 571
Score = 24.2 bits (50), Expect = 7.3
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 160 LWGRRLPSSSAPLVLHMAQPSQAPVLPP 243
++ + LP SSAP + A Q P+ PP
Sbjct: 208 IYNQCLPDSSAPTIDFPALFMQGPLAPP 235
>SPAC1039.08 |||serine acetyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 24.2 bits (50), Expect = 7.3
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -2
Query: 47 TLAQTIWPKLCTSAE 3
TL Q IWPKL AE
Sbjct: 11 TLVQAIWPKLRKEAE 25
>SPBP23A10.16 |sdh4|tim18|TIM22 inner membrane protein import
complex anchor subunit Tim18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 186
Score = 24.2 bits (50), Expect = 7.3
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +2
Query: 278 HHSRCHGGYH 307
HHS+ HG YH
Sbjct: 78 HHSKLHGSYH 87
>SPAC1B9.02c |sck1||serine/threonine protein kinase
Sck1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 696
Score = 24.2 bits (50), Expect = 7.3
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +1
Query: 103 YSHIQEKWPKIQSMDLSLELWG 168
+ ++QE W K++ +DL+ L G
Sbjct: 260 HEYVQEAWYKLEPLDLTKSLEG 281
>SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 23.8 bits (49), Expect = 9.7
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 1 NSAEVQSLGHIVCAKVVSWSECVQ 72
++A+V+ LG AK++ W E Q
Sbjct: 263 SAAKVKELGLKPLAKIIGWGEAAQ 286
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 23.8 bits (49), Expect = 9.7
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 8/40 (20%)
Frame = +1
Query: 151 SLELWGRRLPSSSAPLVLHMAQ--------PSQAPVLPPW 246
+ E+W + P+ P +LHM + S P L PW
Sbjct: 608 NFEVWAAQKPTIEPPTILHMLKAFVQCEQCESPLPKLSPW 647
>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 668
Score = 23.8 bits (49), Expect = 9.7
Identities = 9/30 (30%), Positives = 15/30 (50%)
Frame = -2
Query: 341 TQDSYDQSVDGNDTRHDNGNDGFHDLLRPH 252
T D S DGN H+ ND ++++ +
Sbjct: 171 THDLISSSKDGNSLTHEFANDSVTEMVQDY 200
>SPAC23H4.09 |cdb4||curved DNA-binding protein
Cdb4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 381
Score = 23.8 bits (49), Expect = 9.7
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3
Query: 123 MAENPIYGPFFGVMGAASAIIFSSLGAAYGTAKSG 227
++E P+ GP V+ AASA +L AA T K G
Sbjct: 132 VSEEPVTGPAADVIAAASA----ALKAAQRTIKPG 162
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 23.8 bits (49), Expect = 9.7
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -2
Query: 311 GNDTRHDNGNDGFHDLLR 258
GN +D N+G HD+L+
Sbjct: 925 GNMDNNDRDNEGIHDILQ 942
>SPBC106.02c |srx1||sulfiredoxin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 124
Score = 23.8 bits (49), Expect = 9.7
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 89 LGPVNTPTFKKNGRKSNLWTFLWSYGGGVCHHLQ 190
L PV+ TFKK+G+ + +++GG CH L+
Sbjct: 61 LPPVDVLTFKKSGK-----PYYFAFGG--CHRLR 87
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,971,087
Number of Sequences: 5004
Number of extensions: 45113
Number of successful extensions: 140
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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