Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_H14
(473 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 137 9e-34
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A... 29 0.36
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S... 29 0.36
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|... 29 0.36
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 29 0.36
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc... 29 0.36
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 29 0.36
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 27 1.9
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 5.9
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce... 25 5.9
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 25 7.8
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon... 25 7.8
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ... 25 7.8
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 137 bits (331), Expect = 9e-34
Identities = 66/157 (42%), Positives = 89/157 (56%)
Frame = +1
Query: 1 IIRHEDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPAILDIKPEDLREKFLAGV 180
++ + KVG SEATLLNMLNISPF+YG+ V +YD G +F+P ILD+ EDL L+
Sbjct: 158 LVSKDAKVGPSEATLLNMLNISPFTYGMDVLTIYDQGNVFSPEILDVSEEDLIGHLLSAA 217
Query: 181 ANVAALSLSIGYPTVASAPHSIANGFKNLLAIAAVTEVDFKEATTIKEYIKDPSKFVXXX 360
+ + A+SL YPT+ S HS+ N +KNL+A++ TE F+ K ++ DPS FV
Sbjct: 218 SIITAISLGANYPTILSVMHSVVNAYKNLVAVSLATEYTFEGTEQTKAFLADPSAFV--V 275
Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXSESDDDMGFGLFD 471
ESD+DMGFGLFD
Sbjct: 276 AAAPAAAAGGEAEAPAAEAAAEEEEESDEDMGFGLFD 312
>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 29.1 bits (62), Expect = 0.36
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +1
Query: 436 ESDDDMGFGLFD 471
ESD+DMGFGLFD
Sbjct: 99 ESDEDMGFGLFD 110
>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 29.1 bits (62), Expect = 0.36
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +1
Query: 436 ESDDDMGFGLFD 471
ESD+DMGFGLFD
Sbjct: 99 ESDEDMGFGLFD 110
>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 109
Score = 29.1 bits (62), Expect = 0.36
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +1
Query: 436 ESDDDMGFGLFD 471
ESD+DMGFGLFD
Sbjct: 98 ESDEDMGFGLFD 109
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 29.1 bits (62), Expect = 0.36
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +1
Query: 436 ESDDDMGFGLFD 471
ESD+DMGFGLFD
Sbjct: 99 ESDEDMGFGLFD 110
>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 29.1 bits (62), Expect = 0.36
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +1
Query: 436 ESDDDMGFGLFD 471
ESD+DMGFGLFD
Sbjct: 98 ESDEDMGFGLFD 109
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 29.1 bits (62), Expect = 0.36
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +1
Query: 436 ESDDDMGFGLFD 471
ESD+DMGFGLFD
Sbjct: 99 ESDEDMGFGLFD 110
>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 506
Score = 26.6 bits (56), Expect = 1.9
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 98 TCLTTRPYEKGEMFNMLRRVASEAP 24
+ LT PYEKGE N +R S P
Sbjct: 279 SALTRLPYEKGEFINFVRYHPSITP 303
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.0 bits (52), Expect = 5.9
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +1
Query: 166 FLAGVANVAALSLSIGYPTVASAPHSIANGFKNLLAIA 279
+L GV +A + PT S PH + GF + IA
Sbjct: 524 YLVGVPLQSATICVVSLPTEDSQPHVLHEGFLGEVCIA 561
>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 25.0 bits (52), Expect = 5.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 102 VHLFDNKTIRKGRDVQHVEK 43
V L D +RKG DVQ +EK
Sbjct: 289 VLLSDTAGLRKGEDVQEIEK 308
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 24.6 bits (51), Expect = 7.8
Identities = 14/61 (22%), Positives = 32/61 (52%)
Frame = +1
Query: 55 LNISPFSYGLVVKQVYDSGTIFAPAILDIKPEDLREKFLAGVANVAALSLSIGYPTVASA 234
L+I F+ G+ + + +G++ +P P + F+A A+ +++S YP ++ +
Sbjct: 186 LDIREFNTGMHIINLLLNGSLKSP------PVSISPSFIASAASTSSVSAPSQYPGLSRS 239
Query: 235 P 237
P
Sbjct: 240 P 240
>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
of oxoglutarate dehydrogenase complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 24.6 bits (51), Expect = 7.8
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 4/24 (16%)
Frame = +1
Query: 292 VDFKEATT----IKEYIKDPSKFV 351
VD +EA T +KEYI+DP+K +
Sbjct: 427 VDGREAVTFLRLVKEYIEDPAKML 450
>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 24.6 bits (51), Expect = 7.8
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -3
Query: 102 VHLFDNKTIRKGRDVQHVEKSSFRSS 25
VH D T+R G + SSFR S
Sbjct: 62 VHCLDIPTVRPGSSMSRTSASSFRYS 87
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.135 0.374
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,470,455
Number of Sequences: 5004
Number of extensions: 23668
Number of successful extensions: 93
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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