Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_H14
(473 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171... 158 2e-39
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164... 157 3e-39
12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160... 157 4e-39
03_02_0966 + 12783515-12783901 30 0.83
07_01_0115 + 851505-852368,852611-852730,853000-853020,853253-85... 30 1.1
02_03_0041 + 14275897-14276370 29 1.9
03_02_0394 - 8081172-8081330,8082015-8082134,8082223-8082271,808... 29 2.5
01_06_1676 - 39084928-39085016,39085462-39085555,39085664-390857... 29 2.5
12_02_1270 + 27466516-27466621,27466722-27466885,27467385-274681... 28 3.3
08_01_0113 + 897970-898038,898148-898271,898811-898896,898996-89... 28 3.3
05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161 28 3.3
04_04_0095 - 22775340-22776017 28 3.3
02_04_0074 - 19474786-19474812,19475174-19475400,19476362-194764... 28 3.3
01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129 28 3.3
04_01_0142 + 1640472-1640611,1641618-1641744,1642233-1642425,164... 28 4.4
03_02_0561 + 9466428-9466502,9466503-9467243,9467592-9467600 28 4.4
03_01_0610 + 4478521-4478715,4480003-4480090,4480255-4480321,448... 27 5.8
06_01_1023 - 7996240-7996369,7997166-7997260,7997430-7997515,799... 27 7.7
>08_01_0215 -
1714224-1714364,1714795-1715187,1715279-1715377,
1716248-1716316,1716408-1716665
Length = 319
Score = 158 bits (383), Expect = 2e-39
Identities = 74/157 (47%), Positives = 98/157 (62%)
Frame = +1
Query: 1 IIRHEDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPAILDIKPEDLREKFLAGV 180
+I+ DKVG+SE+ LL L I PFSYGLV+ VYDSG++F+P +LD+ +DL EKF +GV
Sbjct: 163 LIKKGDKVGSSESALLAKLGIRPFSYGLVITNVYDSGSVFSPEVLDLTEDDLMEKFASGV 222
Query: 181 ANVAALSLSIGYPTVASAPHSIANGFKNLLAIAAVTEVDFKEATTIKEYIKDPSKFVXXX 360
+ VA++SL+I YPT+A+APH NG+KN+LA+A TE + A IKEY+KDPSKF
Sbjct: 223 SMVASVSLAISYPTIAAAPHMFLNGYKNVLAVAVETEYSYPHADKIKEYLKDPSKFAVAA 282
Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXSESDDDMGFGLFD 471
ESD D+G LFD
Sbjct: 283 PVAADSGAAAPSAAKEEEKKEEPEEESDGDLGMSLFD 319
>11_01_0210 -
1647922-1648065,1648459-1648851,1648930-1649028,
1649706-1649774,1649877-1650134
Length = 320
Score = 157 bits (382), Expect = 3e-39
Identities = 76/158 (48%), Positives = 99/158 (62%), Gaps = 1/158 (0%)
Frame = +1
Query: 1 IIRHEDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPAILDIKPEDLREKFLAGV 180
+I+ DKVG+SE+ LL L I PFSYGLV+ VYDSG++F+P +LD+ EDL EKF +GV
Sbjct: 163 LIKKGDKVGSSESALLAKLGIRPFSYGLVITNVYDSGSVFSPEVLDLTEEDLMEKFASGV 222
Query: 181 ANVAALSLSIGYPTVASAPHSIANGFKNLLAIAAVTEVDFKEATTIKEYIKDPSKF-VXX 357
+ VA++SL+I YPT+A+APH NG+KN+LA+A TE + A IKEY+KDPSKF V
Sbjct: 223 SMVASVSLAISYPTIAAAPHMFLNGYKNVLAVAVETEYSYPHADKIKEYLKDPSKFAVAA 282
Query: 358 XXXXXXXXXXXXXXXXXXXXXXXXXSESDDDMGFGLFD 471
ESD D+G LFD
Sbjct: 283 AVAAADSGAAAPAASKEEEKKEEPEEESDGDLGMSLFD 320
>12_01_0211 -
1601129-1601272,1601670-1602062,1602142-1602240,
1602920-1602988,1603071-1603328
Length = 320
Score = 157 bits (381), Expect = 4e-39
Identities = 76/158 (48%), Positives = 99/158 (62%), Gaps = 1/158 (0%)
Frame = +1
Query: 1 IIRHEDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPAILDIKPEDLREKFLAGV 180
+I+ DKVG+SE+ LL L I PFSYGLV+ VYDSG++F+P +LD+ EDL EKF +GV
Sbjct: 163 LIKKGDKVGSSESALLAKLGIRPFSYGLVITNVYDSGSVFSPEVLDLTEEDLMEKFASGV 222
Query: 181 ANVAALSLSIGYPTVASAPHSIANGFKNLLAIAAVTEVDFKEATTIKEYIKDPSKF-VXX 357
+ VA++SL+I YPT+A+APH NG+KN+LA+A TE + A IKEY+KDPSKF V
Sbjct: 223 SMVASVSLAISYPTIAAAPHMFLNGYKNVLAVAVETEYSYPHADKIKEYLKDPSKFAVAA 282
Query: 358 XXXXXXXXXXXXXXXXXXXXXXXXXSESDDDMGFGLFD 471
ESD D+G LFD
Sbjct: 283 PVAAADSGAAAVASSKEEEKKEEPEEESDGDLGMSLFD 320
>03_02_0966 + 12783515-12783901
Length = 128
Score = 30.3 bits (65), Expect = 0.83
Identities = 16/38 (42%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Frame = +1
Query: 172 AGVANVAALSLSIGYPTVASAPHSIANGFKN-LLAIAA 282
AG+A VAA++ ++ P VA A +++ KN LL+IA+
Sbjct: 67 AGIAAVAAVAAALAVPEVAEAAPALSPSLKNFLLSIAS 104
>07_01_0115 +
851505-852368,852611-852730,853000-853020,853253-853369,
853466-853555,853730-853837,853897-853932,853933-854022
Length = 481
Score = 29.9 bits (64), Expect = 1.1
Identities = 21/66 (31%), Positives = 30/66 (45%)
Frame = +1
Query: 145 PEDLREKFLAGVANVAALSLSIGYPTVASAPHSIANGFKNLLAIAAVTEVDFKEATTIKE 324
PE R F AG A V A +P A+A +S GF+ +A +V F E T +
Sbjct: 35 PEKKRASFAAGAAAVRAKVCDARWPASAAAANSAPYGFRGGVATRSVA---FDEMTPRRA 91
Query: 325 YIKDPS 342
+ P+
Sbjct: 92 SVDVPN 97
>02_03_0041 + 14275897-14276370
Length = 157
Score = 29.1 bits (62), Expect = 1.9
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -1
Query: 233 ADATVGYPMDNESAATLATPARNFSRRSSGLMSRIAGAKMVPE 105
A+ G P+ E AT A RR+SG + +AG +PE
Sbjct: 88 AEEEDGVPVPGEVVATTADAQETRQRRNSGSNATVAGEDALPE 130
>03_02_0394 -
8081172-8081330,8082015-8082134,8082223-8082271,
8083193-8083371,8083583-8083852,8084480-8084631,
8085694-8085715,8086314-8086430
Length = 355
Score = 28.7 bits (61), Expect = 2.5
Identities = 19/75 (25%), Positives = 30/75 (40%)
Frame = +1
Query: 115 IFAPAILDIKPEDLREKFLAGVANVAALSLSIGYPTVASAPHSIANGFKNLLAIAAVTEV 294
+F I + K + K LA V N + ++ IGYP S + + T+
Sbjct: 237 VFKELIFEPKEYKIFGKALARVQNDSQVTAKIGYPVTGYGNESRNRAARQRIPNKVWTDE 296
Query: 295 DFKEATTIKEYIKDP 339
D E + YI+ P
Sbjct: 297 DGVEHVEVNFYIRGP 311
>01_06_1676 -
39084928-39085016,39085462-39085555,39085664-39085750,
39085941-39086073,39086451-39086724,39086863-39086989,
39087095-39087345,39087476-39087575
Length = 384
Score = 28.7 bits (61), Expect = 2.5
Identities = 18/42 (42%), Positives = 21/42 (50%)
Frame = +1
Query: 73 SYGLVVKQVYDSGTIFAPAILDIKPEDLREKFLAGVANVAAL 198
SYG V V DSGT A LD + +FL VA V+ L
Sbjct: 83 SYGRVYYAVLDSGTKIAVKKLDSNENEPTSEFLTQVALVSRL 124
>12_02_1270 +
27466516-27466621,27466722-27466885,27467385-27468173,
27468263-27468479,27469078-27469256,27470233-27470474,
27470607-27470994
Length = 694
Score = 28.3 bits (60), Expect = 3.3
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -3
Query: 177 SSKELLAKVLRLDVENCRREDGTGVVHLFDNKTIRK 70
+ K LL K++RLDV+N R+ L+ N +I K
Sbjct: 408 NKKSLLGKIMRLDVDNPPRQSEIANQSLWGNYSIPK 443
>08_01_0113 +
897970-898038,898148-898271,898811-898896,898996-899049
Length = 110
Score = 28.3 bits (60), Expect = 3.3
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +1
Query: 436 ESDDDMGFGLFD 471
ESDDDMGF LFD
Sbjct: 99 ESDDDMGFSLFD 110
>05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161
Length = 113
Score = 28.3 bits (60), Expect = 3.3
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +1
Query: 436 ESDDDMGFGLFD 471
ESDDDMGF LFD
Sbjct: 102 ESDDDMGFSLFD 113
>04_04_0095 - 22775340-22776017
Length = 225
Score = 28.3 bits (60), Expect = 3.3
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 96 GVRLRYHLRAGNSRHQAGGPSREVPCWSG 182
G+ +RY++ AG+ + + +REVPC G
Sbjct: 37 GLFVRYYVPAGDGKRRIRVDTREVPCGGG 65
>02_04_0074 -
19474786-19474812,19475174-19475400,19476362-19476496,
19478662-19479193
Length = 306
Score = 28.3 bits (60), Expect = 3.3
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +1
Query: 436 ESDDDMGFGLFD 471
ESDDDMGF LFD
Sbjct: 295 ESDDDMGFSLFD 306
>01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129
Length = 114
Score = 28.3 bits (60), Expect = 3.3
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +1
Query: 436 ESDDDMGFGLFD 471
ESDDDMGF LFD
Sbjct: 103 ESDDDMGFSLFD 114
>04_01_0142 +
1640472-1640611,1641618-1641744,1642233-1642425,
1642793-1643349
Length = 338
Score = 27.9 bits (59), Expect = 4.4
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +3
Query: 138 HQAGGPSREVPCWSGQRGRALVVHRVPDGR 227
H AG P W G+R RA H +P GR
Sbjct: 13 HLAGQPPLLTAGWGGRRERARRSHAMPTGR 42
>03_02_0561 + 9466428-9466502,9466503-9467243,9467592-9467600
Length = 274
Score = 27.9 bits (59), Expect = 4.4
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +2
Query: 182 PTWPRSRCPSGTRRSRL 232
PT PRSR PS +RR R+
Sbjct: 149 PTTPRSRAPSSSRRRRM 165
>03_01_0610 +
4478521-4478715,4480003-4480090,4480255-4480321,
4480561-4480679,4480809-4480904,4481019-4481074,
4481400-4481485,4481914-4482048,4482216-4482300
Length = 308
Score = 27.5 bits (58), Expect = 5.8
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Frame = +1
Query: 79 GLVVKQVYDSGTIFAPAILDI--KPEDLREKFLAG-VANVAALSLSIGYPTVASAPHSIA 249
G ++V+D + L++ P KFLA + + + YP A A H I
Sbjct: 130 GAGTERVFDEVIQYNDGSLEVAFSPSKAMGKFLASELPRTTETTCKVLYPASAKAGHEIQ 189
Query: 250 NGFKN 264
NG N
Sbjct: 190 NGLSN 194
>06_01_1023 -
7996240-7996369,7997166-7997260,7997430-7997515,
7998034-7998184
Length = 153
Score = 27.1 bits (57), Expect = 7.7
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Frame = +3
Query: 117 LRAGNSRHQAGGPSREVPCWSGQRGRAL----VVHRVPDGRVCA 236
+ AG R + GG P W G R RA+ + VP GR A
Sbjct: 7 VEAGRRRRRGGGSDPPSPMWGGGRRRAVSRRGKLVAVPVGRAAA 50
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.135 0.374
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,525,747
Number of Sequences: 37544
Number of extensions: 188153
Number of successful extensions: 640
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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