Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_H13
         (420 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|...    25   3.6  
SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces p...    25   4.8  
SPAC688.03c |||human AMMECR1 homolog|Schizosaccharomyces pombe|c...    24   8.4  

>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 552

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +1

Query: 52  LFFNYAKSSIEMQFFFTKCYVCTFHA 129
           +FF +++ ++   FF+  CY C   A
Sbjct: 204 MFFPHSEQALLQPFFYISCYGCNIPA 229


>SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 392

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -1

Query: 381 QGSI*SYLCFNLQTVITVMGIFSYRTNTEQL 289
           +  + S L +N +T++ +    +YRTNT  L
Sbjct: 194 ESQVKSALSWNNETILLIHNAIAYRTNTGML 224


>SPAC688.03c |||human AMMECR1 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 204

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +1

Query: 319 DSHYCYYCLQI 351
           D  YCYYC ++
Sbjct: 14  DKEYCYYCFEV 24


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,591,966
Number of Sequences: 5004
Number of extensions: 29959
Number of successful extensions: 76
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)