Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_H13
(420 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79757-3|CAC42307.1| 585|Caenorhabditis elegans Hypothetical pr... 29 1.0
Z79757-2|CAB02129.2| 587|Caenorhabditis elegans Hypothetical pr... 29 1.0
AF020788-1|AAC47809.1| 587|Caenorhabditis elegans SEL-10 protein. 29 1.0
U40939-3|ABD63235.1| 960|Caenorhabditis elegans Hunchback like ... 28 2.4
U40939-2|AAA81701.3| 982|Caenorhabditis elegans Hunchback like ... 28 2.4
AF097737-1|AAD16170.1| 982|Caenorhabditis elegans hunchback-rel... 28 2.4
U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of ... 27 4.1
AC024831-12|AAW57824.1| 356|Caenorhabditis elegans Serpentine r... 27 4.1
AC024831-8|AAK72079.3| 362|Caenorhabditis elegans Serpentine re... 27 4.1
AC024831-6|AAY86308.1| 351|Caenorhabditis elegans Hypothetical ... 27 4.1
Z81557-1|CAB04535.1| 343|Caenorhabditis elegans Hypothetical pr... 27 5.5
Z80214-2|CAB02264.2| 338|Caenorhabditis elegans Hypothetical pr... 26 9.5
>Z79757-3|CAC42307.1| 585|Caenorhabditis elegans Hypothetical
protein F55B12.3b protein.
Length = 585
Score = 29.5 bits (63), Expect = 1.0
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -1
Query: 177 NINKLCPSIQKHFRKNCMKCTYITFCKKKLHLDTGFRIIK 58
NI +L I+ HF+++ + C + K LH TG+ ++K
Sbjct: 105 NIRQLRAIIEPHFQRDFLSCLPVELGMKILHNLTGYDLLK 144
>Z79757-2|CAB02129.2| 587|Caenorhabditis elegans Hypothetical
protein F55B12.3a protein.
Length = 587
Score = 29.5 bits (63), Expect = 1.0
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -1
Query: 177 NINKLCPSIQKHFRKNCMKCTYITFCKKKLHLDTGFRIIK 58
NI +L I+ HF+++ + C + K LH TG+ ++K
Sbjct: 107 NIRQLRAIIEPHFQRDFLSCLPVELGMKILHNLTGYDLLK 146
>AF020788-1|AAC47809.1| 587|Caenorhabditis elegans SEL-10 protein.
Length = 587
Score = 29.5 bits (63), Expect = 1.0
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -1
Query: 177 NINKLCPSIQKHFRKNCMKCTYITFCKKKLHLDTGFRIIK 58
NI +L I+ HF+++ + C + K LH TG+ ++K
Sbjct: 107 NIRQLRAIIEPHFQRDFLSCLPVELGMKILHNLTGYDLLK 146
>U40939-3|ABD63235.1| 960|Caenorhabditis elegans Hunchback like
(fly gap gene related)protein 1, isoform b protein.
Length = 960
Score = 28.3 bits (60), Expect = 2.4
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = -1
Query: 174 INKLCPSIQKHFRKNCMKCTYIT-FCKK-KLHL 82
+N S H++ CM CTY T +C KLHL
Sbjct: 588 LNSHMKSHTNHYQFRCMDCTYATKYCHSLKLHL 620
>U40939-2|AAA81701.3| 982|Caenorhabditis elegans Hunchback like
(fly gap gene related)protein 1, isoform a protein.
Length = 982
Score = 28.3 bits (60), Expect = 2.4
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = -1
Query: 174 INKLCPSIQKHFRKNCMKCTYIT-FCKK-KLHL 82
+N S H++ CM CTY T +C KLHL
Sbjct: 610 LNSHMKSHTNHYQFRCMDCTYATKYCHSLKLHL 642
>AF097737-1|AAD16170.1| 982|Caenorhabditis elegans
hunchback-related protein protein.
Length = 982
Score = 28.3 bits (60), Expect = 2.4
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = -1
Query: 174 INKLCPSIQKHFRKNCMKCTYIT-FCKK-KLHL 82
+N S H++ CM CTY T +C KLHL
Sbjct: 610 LNSHMKSHTNHYQFRCMDCTYATKYCHSLKLHL 642
>U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of
potassium channelsprotein 2 protein.
Length = 1564
Score = 27.5 bits (58), Expect = 4.1
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -1
Query: 177 NINKLCPSIQKHFRKNCMKCTYITFCKK 94
N+ K+C K+ +K C KC CKK
Sbjct: 1284 NVQKMCKKCAKNVQKMCKKCA--KMCKK 1309
>AC024831-12|AAW57824.1| 356|Caenorhabditis elegans Serpentine
receptor, class t protein23 protein.
Length = 356
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +1
Query: 37 FKLSCLFFNYAKSSIEMQFFFTKCYVCTFHAILSEVFLY 153
F S F + + S + Q FF +C+F+AI + +++Y
Sbjct: 231 FAKSKHFRSESISRTQTQIFFQSVLICSFNAIAAYIYVY 269
>AC024831-8|AAK72079.3| 362|Caenorhabditis elegans Serpentine
receptor, class t protein24 protein.
Length = 362
Score = 27.5 bits (58), Expect = 4.1
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +1
Query: 73 SSIEMQFFFTKCYVCTFHAILSEVFLY 153
S + Q FF +C+F+AI + +++Y
Sbjct: 249 SKTQKQIFFQSVLICSFNAIAAYIYVY 275
>AC024831-6|AAY86308.1| 351|Caenorhabditis elegans Hypothetical
protein Y55F3C.10 protein.
Length = 351
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +1
Query: 37 FKLSCLFFNYAKSSIEMQFFFTKCYVCTFHAILSEVFLY 153
F S F + + S + Q FF +C+F+AI + +++Y
Sbjct: 227 FAKSKHFRSESISRTQTQIFFQSVLICSFNAIAAYIYVY 265
>Z81557-1|CAB04535.1| 343|Caenorhabditis elegans Hypothetical
protein F59A1.3 protein.
Length = 343
Score = 27.1 bits (57), Expect = 5.5
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +2
Query: 41 SYLVCFLIMRNPVSRCNFFLQNVMYVHFMQFFLKCFCIEGHNLLILTSYN 190
S L+C +I + P + CN+ +++M + F F + I+G N +L YN
Sbjct: 23 SILICLIITKTPRNMCNY--RHLMLI-FSIFGIIFAFIDGTNQPMLHFYN 69
>Z80214-2|CAB02264.2| 338|Caenorhabditis elegans Hypothetical
protein C27D8.4 protein.
Length = 338
Score = 26.2 bits (55), Expect = 9.5
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +2
Query: 137 LKCFCIEGHNLLILTS-YNTYCDSP*DVSDYLWLLMFNFVAKHRRVPVVSIHSCSV 301
+ C+ ++ + L + Y Y S +++ Y+ N VAK RRV VS+H +V
Sbjct: 205 MACYSLDSNFLKVYAGPYQAYASSKLNLAVYV-----NEVAKKRRVNTVSLHPGTV 255
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,860,799
Number of Sequences: 27780
Number of extensions: 172427
Number of successful extensions: 382
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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